Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10774492	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774496	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10849647	0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10849651	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10849652	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10849653	0.94[ASN][1000 genomes]
rs10849656	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10849657	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10849659	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11064757	0.80[JPT][hapmap]
rs11064761	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11064763	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11064764	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12370130	0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs4300442	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4465416	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4991185	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs56686166	0.93[ASN][1000 genomes]
rs7298161	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7301599	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs73404383	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119819400-119830800	Weak transcription	Right Atrium	heart
2	chr12:119820200-119824400	Weak transcription	Fetal Lung	lung
3	chr12:119820400-119826800	Weak transcription	Left Ventricle	heart
4	chr12:119820600-119824600	Weak transcription	Fetal Heart	heart
5	chr12:119823600-119823800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr12:119823600-119823800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:119823600-119824600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:119823600-119825200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:119823600-119825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:119823600-119825800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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