Variant report

Variant	rs11064772
Chromosome Location	chr12:119829588-119829589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11064767	0.82[CEU][hapmap]
rs11064768	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11064789	0.89[GIH][hapmap]
rs12370095	0.89[GIH][hapmap]
rs12370442	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119819400-119830800	Weak transcription	Right Atrium	heart
2	chr12:119825400-119830000	Weak transcription	Fetal Lung	lung
3	chr12:119827400-119829600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:119827400-119829600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:119829200-119829800	Enhancers	Left Ventricle	heart
6	chr12:119829200-119830200	Enhancers	Fetal Muscle Leg	muscle
7	chr12:119829400-119830200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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