Variant report

Variant	rs11064767
Chromosome Location	chr12:119818419-119818420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119816571..119818940-chr12:119824942..119826666,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11064756	0.86[CEU][hapmap]
rs11064768	0.82[CEU][hapmap]
rs11064772	0.82[CEU][hapmap]
rs11064773	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11064776	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11064778	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11064779	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11064782	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11064785	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11064787	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11064789	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12367014	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12367044	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12367962	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12368789	0.86[CEU][hapmap]
rs12368799	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12370095	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12371440	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4471499	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7306221	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7308840	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7312409	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7959781	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7971064	0.86[CEU][hapmap]
rs7972234	0.86[CEU][hapmap]
rs7973310	0.86[CEU][hapmap]
rs7977458	0.85[CEU][hapmap]
rs7980254	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3423351	chr12:119818410-119818678	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119811400-119819600	Weak transcription	Lung	lung
2	chr12:119815800-119819400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:119817200-119818800	Weak transcription	Right Atrium	heart
4	chr12:119817400-119818800	Weak transcription	Left Ventricle	heart
5	chr12:119817400-119819800	Weak transcription	Fetal Lung	lung
6	chr12:119817400-119820200	Weak transcription	Right Ventricle	heart
7	chr12:119817400-119822400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:119817600-119823600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:119818200-119819000	Weak transcription	Fetal Heart	heart

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