Variant report

Variant	rs12367014
Chromosome Location	chr12:119835989-119835990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11064767	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11064773	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11064776	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064778	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11064779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064782	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064785	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064787	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064789	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12367044	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367962	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12368799	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12370095	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12371440	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4471499	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7306221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7308840	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312409	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7959781	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980254	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3327689	chr12:119834794-119837342	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3384075	chr12:119834969-119837117	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119834400-119850800	Weak transcription	Right Ventricle	heart
2	chr12:119835200-119836400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr12:119835800-119836000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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