Variant report

Variant	rs11064787
Chromosome Location	chr12:119851956-119851957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11064767	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11064773	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11064776	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064778	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11064779	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064782	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064785	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064789	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367014	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12367044	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12367962	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12368799	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12370095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12371440	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4471499	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7306221	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7308840	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7312409	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7959781	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7980254	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899553	chr12:119837250-119876571	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119848600-119853000	Weak transcription	Placenta	Placenta
2	chr12:119851600-119872400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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