Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11064767	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11064773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11064776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064778	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11064779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11064782	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064785	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064787	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064789	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12367014	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12370095	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12371440	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4471499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7306221	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7308840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312409	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7959781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7980254	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3327689	chr12:119834794-119837342	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3384075	chr12:119834969-119837117	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119834400-119850800	Weak transcription	Right Ventricle	heart
2	chr12:119835200-119836400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr12:119836000-119836400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:119836000-119837600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:119836200-119836400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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