Variant report

Variant	rs11064861
Chromosome Location	chr12:120071660-120071661
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120067301..120069261-chr12:120071540..120073086,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252886	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1029418	0.90[ASN][1000 genomes]
rs10732608	0.96[ASN][1000 genomes]
rs10744740	0.80[ASN][1000 genomes]
rs10744741	0.83[ASN][1000 genomes]
rs10744742	0.83[ASN][1000 genomes]
rs10774505	0.80[ASN][1000 genomes]
rs10774507	0.97[ASN][1000 genomes]
rs10774509	0.96[ASN][1000 genomes]
rs10849682	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849683	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849685	0.97[ASN][1000 genomes]
rs11064842	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11064855	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11064856	0.97[ASN][1000 genomes]
rs11064857	0.84[ASN][1000 genomes]
rs11064858	0.88[ASN][1000 genomes]
rs11064864	0.96[ASN][1000 genomes]
rs1123790	0.86[ASN][1000 genomes]
rs1154836	0.97[ASN][1000 genomes]
rs12708371	0.83[ASN][1000 genomes]
rs12827937	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1303904	0.83[ASN][1000 genomes]
rs1319529	0.97[ASN][1000 genomes]
rs1476453	0.80[ASN][1000 genomes]
rs1858982	0.97[ASN][1000 genomes]
rs1970985	0.83[ASN][1000 genomes]
rs2078938	0.97[ASN][1000 genomes]
rs2157806	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2188711	0.86[ASN][1000 genomes]
rs2301653	0.97[ASN][1000 genomes]
rs2301654	0.97[ASN][1000 genomes]
rs2301655	0.86[ASN][1000 genomes]
rs2893796	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2893805	0.94[ASN][1000 genomes]
rs4766944	0.97[ASN][1000 genomes]
rs4766945	0.97[ASN][1000 genomes]
rs4767832	0.80[ASN][1000 genomes]
rs4767833	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4767834	0.97[ASN][1000 genomes]
rs4767835	0.96[ASN][1000 genomes]
rs4767836	0.86[ASN][1000 genomes]
rs6490260	0.97[ASN][1000 genomes]
rs6490261	0.97[ASN][1000 genomes]
rs7138785	0.97[ASN][1000 genomes]
rs7306273	0.80[ASN][1000 genomes]
rs7310741	0.82[ASN][1000 genomes]
rs739423	0.80[ASN][1000 genomes]
rs7955441	0.96[ASN][1000 genomes]
rs7957284	0.82[ASN][1000 genomes]
rs7958547	0.97[ASN][1000 genomes]
rs7959425	0.96[ASN][1000 genomes]
rs7965791	0.83[ASN][1000 genomes]
rs7978341	0.82[ASN][1000 genomes]
rs7981024	0.82[ASN][1000 genomes]
rs9668717	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052595	chr12:119992580-120132038	Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv541616	chr12:119992580-120132038	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11064861	TMEM233	cis	Thyroid	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120059200-120083400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:120065400-120078400	Weak transcription	Right Atrium	heart
3	chr12:120068600-120082200	Weak transcription	HSMMtube	muscle
4	chr12:120070200-120076600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:120070400-120072400	Weak transcription	HSMM	muscle
6	chr12:120070400-120072800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:120070400-120073400	Weak transcription	Psoas Muscle	Psoas
8	chr12:120071400-120081600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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