Variant report

Variant	rs7955441
Chromosome Location	chr12:120080622-120080623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120073225..120075222-chr12:120079539..120081654,2	MCF-7	breast:
2	chr12:120080539..120081225-chr12:120105078..120105830,2	K562	blood:
3	chr12:119882355..119882900-chr12:120080497..120081371,2	K562	blood:
4	chr12:120079622..120081947-chr12:120086294..120088145,2	K562	blood:

Variant related genes	Relation type
ENSG00000111725	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1029418	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10732608	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744740	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10744741	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10744742	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10774505	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10774507	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774509	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849673	0.82[CEU][hapmap]
rs10849679	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10849682	0.83[ASN][1000 genomes]
rs10849683	0.81[ASN][1000 genomes]
rs10849685	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849687	0.94[EUR][1000 genomes]
rs11064843	0.93[EUR][1000 genomes]
rs11064855	0.84[ASN][1000 genomes]
rs11064856	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11064857	0.86[ASN][1000 genomes]
rs11064858	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11064861	0.96[ASN][1000 genomes]
rs11064864	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11064868	0.95[EUR][1000 genomes]
rs1123790	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1154836	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12708371	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12827937	0.80[ASN][1000 genomes]
rs1303904	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1319529	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1476453	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1858982	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1966324	0.91[EUR][1000 genomes]
rs1970985	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2078938	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2157806	0.80[ASN][1000 genomes]
rs2188711	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2301653	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2301654	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2301655	0.85[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2893796	0.80[ASN][1000 genomes]
rs2893805	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3847956	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4766944	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4766945	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767832	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4767833	0.81[ASN][1000 genomes]
rs4767834	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767835	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767836	0.87[ASN][1000 genomes]
rs6490260	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6490261	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6490262	0.96[EUR][1000 genomes]
rs7138785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295362	0.85[CEU][hapmap]
rs7306273	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7310741	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7316295	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs739423	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7954674	0.85[CEU][hapmap]
rs7957284	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7958547	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7959425	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965791	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7978341	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7981024	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9668717	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052595	chr12:119992580-120132038	Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv541616	chr12:119992580-120132038	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120059200-120083400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:120068600-120082200	Weak transcription	HSMMtube	muscle
3	chr12:120071400-120081600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr12:120079200-120081200	Weak transcription	Psoas Muscle	Psoas
5	chr12:120079200-120081600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:120079600-120082400	Weak transcription	HSMM	muscle
7	chr12:120080000-120082200	Weak transcription	Muscle Satellite Cultured Cells	--

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