Variant report

Variant	rs11064910
Chromosome Location	chr12:120229942-120229943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10744743	0.90[CHB][hapmap]
rs10774514	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs10849699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11064878	0.87[EUR][1000 genomes]
rs11064902	0.87[EUR][1000 genomes]
rs11064913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11064915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11064918	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11064920	0.95[ASN][1000 genomes]
rs11064926	0.87[EUR][1000 genomes]
rs11064929	0.87[EUR][1000 genomes]
rs11064930	0.87[EUR][1000 genomes]
rs11064931	0.87[EUR][1000 genomes]
rs11064933	0.87[EUR][1000 genomes]
rs11064934	0.87[EUR][1000 genomes]
rs11064935	0.87[EUR][1000 genomes]
rs11064936	0.87[EUR][1000 genomes]
rs11064937	0.87[EUR][1000 genomes]
rs11064938	0.87[EUR][1000 genomes]
rs11064939	0.87[EUR][1000 genomes]
rs11064940	0.87[EUR][1000 genomes]
rs11064941	0.87[EUR][1000 genomes]
rs11064942	0.87[EUR][1000 genomes]
rs11064944	0.87[EUR][1000 genomes]
rs1182807	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs12231774	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs280581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3742046	0.87[EUR][1000 genomes]
rs377876	1.00[CHB][hapmap]
rs3809307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3847960	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs435136	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs4767847	0.90[CHB][hapmap]
rs4767848	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs4767849	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs55680945	0.87[EUR][1000 genomes]
rs57617020	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58261374	0.87[EUR][1000 genomes]
rs58974044	0.87[EUR][1000 genomes]
rs59953935	0.87[EUR][1000 genomes]
rs60782728	0.87[EUR][1000 genomes]
rs7295984	0.83[ASN][1000 genomes]
rs7308076	0.90[CHB][hapmap]
rs740032	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs7966776	0.87[EUR][1000 genomes]
rs7971089	0.87[EUR][1000 genomes]
rs7975107	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7978181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
2	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
3	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
5	chr12:120210000-120235400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
7	chr12:120210800-120231400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
9	chr12:120218800-120241000	Weak transcription	Fetal Kidney	kidney
10	chr12:120218800-120241200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr12:120219000-120241400	Weak transcription	NHEK	skin
12	chr12:120220000-120240600	Weak transcription	Fetal Lung	lung
13	chr12:120221600-120241000	Weak transcription	NH-A	brain
14	chr12:120221600-120241400	Weak transcription	HMEC	breast
15	chr12:120221800-120241400	Weak transcription	HSMM	muscle
16	chr12:120222000-120231200	Weak transcription	K562	blood
17	chr12:120222000-120241200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr12:120222400-120230400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:120222400-120231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:120222800-120231200	Weak transcription	NHLF	lung
21	chr12:120222800-120241000	Weak transcription	Fetal Intestine Small	intestine
22	chr12:120223000-120232200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr12:120223000-120234200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:120223000-120239800	Weak transcription	Brain Germinal Matrix	brain
25	chr12:120223000-120255800	Weak transcription	HepG2	liver
26	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:120223200-120231200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:120223200-120231200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:120223200-120231200	Weak transcription	Fetal Thymus	thymus
30	chr12:120223200-120231200	Weak transcription	GM12878-XiMat	blood
31	chr12:120223200-120239800	Weak transcription	Osteobl	bone
32	chr12:120223200-120242000	Weak transcription	HUVEC	blood vessel
33	chr12:120223400-120231200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:120223400-120231600	Weak transcription	Fetal Muscle Leg	muscle
35	chr12:120223400-120234400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:120223400-120234400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:120223600-120231400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr12:120223800-120231000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:120224000-120231200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr12:120224400-120231000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr12:120224400-120241200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:120224600-120231000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr12:120224600-120231200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:120224600-120231400	Weak transcription	A549	lung
45	chr12:120224600-120236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr12:120224800-120231000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:120224800-120231800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr12:120225000-120231200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr12:120225000-120231800	Weak transcription	Fetal Stomach	stomach
50	chr12:120226400-120231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links