Variant report

Variant	rs11065159
Chromosome Location	chr12:120983581-120983582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr12:120983543-120983989	HepG2	liver:	n/a	n/a
2	FOXA1	chr12:120983542-120984127	HepG2	liver:	n/a	chr12:120983981-120983993
3	FOXA1	chr12:120983476-120984121	HepG2	liver:	n/a	chr12:120983981-120983993
4	FOXA1	chr12:120983504-120983764	HepG2	liver:	n/a	n/a
5	FOXA1	chr12:120983514-120984167	HepG2	liver:	n/a	chr12:120983981-120983993
6	NR2F2	chr12:120983410-120984037	HepG2	liver:	n/a	n/a
7	FOXA2	chr12:120983572-120984086	HepG2	liver:	n/a	chr12:120983981-120983993
8	HDAC2	chr12:120983543-120983782	HepG2	liver:	n/a	n/a
9	TEAD4	chr12:120983439-120983921	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:120883764..120885896-chr12:120983309..120985628,3	K562	blood:
2	chr12:120982370..120986191-chr12:120990238..120994001,4	K562	blood:
3	chr12:120982785..120987053-chr12:120988717..120992540,5	MCF-7	breast:

Variant related genes	Relation type
RNF10	TF binding region
ENSG00000257218	Chromatin interaction
ENSG00000022840	Chromatin interaction
ENSG00000170855	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11065156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614028	1.00[ASN][1000 genomes]
rs9657933	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906	chr12:120973683-121018441	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120973400-120984200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:120973800-120984000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:120974400-120984200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:120974600-120984000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:120975200-120985200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:120976000-121018000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:120976200-120984200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:120976200-120984600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:120976400-120984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:120976400-120984200	Weak transcription	Aorta	Aorta
11	chr12:120976400-121018200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:120976600-120983600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr12:120976600-120984200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:120976800-120984000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:120977000-120984000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:120977000-120984400	Weak transcription	Fetal Brain Male	brain
17	chr12:120977200-120983800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr12:120977400-120984000	Weak transcription	Esophagus	oesophagus
19	chr12:120977400-120984000	Weak transcription	HSMMtube	muscle
20	chr12:120977400-120984200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:120977400-120985000	Weak transcription	Fetal Kidney	kidney
22	chr12:120977400-120987400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:120977400-120995600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:120977400-121017600	Strong transcription	Fetal Thymus	thymus
25	chr12:120977400-121018200	Strong transcription	Fetal Stomach	stomach
26	chr12:120977600-120983800	Weak transcription	Brain Substantia Nigra	brain
27	chr12:120977600-120984000	Weak transcription	NH-A	brain
28	chr12:120977600-120984200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr12:120977600-121016800	Strong transcription	Dnd41	blood
30	chr12:120977800-120984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:120977800-120984000	Weak transcription	Lung	lung
32	chr12:120977800-120988400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr12:120978600-120983600	Weak transcription	Brain Anterior Caudate	brain
34	chr12:120978600-120983600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr12:120978600-120983600	Weak transcription	A549	lung
36	chr12:120978600-120984000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:120978600-120984000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:120978600-120984200	Weak transcription	Fetal Lung	lung
39	chr12:120978600-120984400	Weak transcription	Brain Germinal Matrix	brain
40	chr12:120978600-120984400	Weak transcription	NHDF-Ad	bronchial
41	chr12:120979200-120983600	Weak transcription	Osteobl	bone
42	chr12:120979200-120983800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr12:120979200-120984000	Weak transcription	NHLF	lung
44	chr12:120979400-120984000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:120980000-120987200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr12:120980200-120983600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr12:120980200-120984000	Weak transcription	Small Intestine	intestine
48	chr12:120980400-120984400	Weak transcription	Fetal Brain Female	brain
49	chr12:120980600-120983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr12:120980600-120984000	Weak transcription	Fetal Intestine Large	intestine

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