Variant report

Variant	rs11614028
Chromosome Location	chr12:120775594-120775595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10849743	0.81[EUR][1000 genomes]
rs11065075	0.85[EUR][1000 genomes]
rs11065091	0.87[EUR][1000 genomes]
rs11065094	0.81[EUR][1000 genomes]
rs11065156	1.00[ASN][1000 genomes]
rs11065159	1.00[ASN][1000 genomes]
rs1179387	0.81[EUR][1000 genomes]
rs1557769	0.87[EUR][1000 genomes]
rs206951	0.87[EUR][1000 genomes]
rs2522129	0.81[EUR][1000 genomes]
rs2522138	0.81[EUR][1000 genomes]
rs2522141	0.81[EUR][1000 genomes]
rs2524393	1.00[ASN][1000 genomes]
rs3742038	0.82[EUR][1000 genomes]
rs5637	0.81[EUR][1000 genomes]
rs67706074	0.87[EUR][1000 genomes]
rs7314115	0.85[EUR][1000 genomes]
rs73416934	0.87[EUR][1000 genomes]
rs9657933	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
3	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120783800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
3	chr12:120766200-120779200	Weak transcription	Liver	Liver
4	chr12:120769400-120785000	Weak transcription	Gastric	stomach
5	chr12:120773600-120780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links