Variant report

Variant	rs11065574
Chromosome Location	chr12:121870071-121870072
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121868417..121872600-chr12:121875201..121878428,3	K562	blood:
2	chr12:121869933..121872721-chr12:121879594..121881774,2	MCF-7	breast:
3	chr12:121836180..121839022-chr12:121867646..121871354,4	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11065568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065587	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11065597	1.00[AMR][1000 genomes]
rs11065601	1.00[AMR][1000 genomes]
rs12227224	1.00[AMR][1000 genomes]
rs28538950	1.00[AMR][1000 genomes]
rs3817550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7970637	1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:121850000-121871800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:121850400-121887400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:121850800-121874600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:121851000-121870800	Strong transcription	Fetal Thymus	thymus
6	chr12:121851600-121872200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:121851600-121874400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:121851800-121874600	Strong transcription	Dnd41	blood
9	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:121852000-121874400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:121852200-121871600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:121852200-121872200	Strong transcription	Liver	Liver
13	chr12:121852200-121873400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:121852200-121874400	Strong transcription	Fetal Stomach	stomach
15	chr12:121852200-121883200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:121852200-121884800	Strong transcription	Primary T cells from cord blood	blood
17	chr12:121852400-121872000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:121852400-121874400	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr12:121852400-121881800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr12:121852600-121872200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:121852600-121881600	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr12:121852800-121872000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr12:121852800-121874200	Strong transcription	Thymus	Thymus
24	chr12:121853000-121874400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:121853000-121884800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:121853600-121872000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr12:121853800-121870800	Strong transcription	NH-A	brain
28	chr12:121853800-121871400	Strong transcription	Placenta	Placenta
29	chr12:121853800-121874000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr12:121853800-121880800	Strong transcription	Ovary	ovary
31	chr12:121853800-121880800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr12:121853800-121881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:121853800-121881000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:121854000-121872000	Strong transcription	Fetal Lung	lung
35	chr12:121854000-121872200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr12:121854000-121874200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr12:121854000-121874600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:121854000-121880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:121854000-121881400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:121854200-121872200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:121854200-121881000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr12:121854400-121873400	Strong transcription	A549	lung
43	chr12:121854600-121870800	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr12:121854800-121871000	Strong transcription	NHLF	lung
45	chr12:121854800-121871400	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr12:121854800-121871800	Strong transcription	HUVEC	blood vessel
47	chr12:121855000-121872000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr12:121855600-121874000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr12:121857200-121870800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr12:121857400-121871000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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