Variant report

Variant	rs11065587
Chromosome Location	chr12:121906164-121906165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121732867..121735016-chr12:121903927..121906656,4	K562	blood:
2	chr12:121904021..121906828-chr12:121951565..121953128,3	MCF-7	breast:
3	chr12:121879603..121883744-chr12:121903538..121907174,6	MCF-7	breast:
4	chr12:121904155..121907527-chr12:121908588..121911901,5	K562	blood:
5	chr12:121904500..121907610-chr12:122092139..122094849,3	K562	blood:
6	chr12:121903815..121906765-chr12:121910137..121911892,2	MCF-7	breast:
7	chr12:121904446..121906888-chr12:121907904..121910118,2	MCF-7	breast:
8	chr12:121861656..121865460-chr12:121901915..121906805,6	K562	blood:
9	chr12:121902658..121907568-chr12:122239086..122242306,5	K562	blood:
10	chr12:121732416..121735864-chr12:121903686..121906224,3	K562	blood:
11	chr12:121904005..121907023-chr12:122063643..122065900,3	MCF-7	breast:
12	chr12:121905419..121907015-chr12:122149100..122151957,2	K562	blood:
13	chr12:121745234..121747818-chr12:121905283..121907102,2	MCF-7	breast:
14	chr12:121904633..121906958-chr12:122237505..122240371,2	MCF-7	breast:
15	chr12:121902246..121907496-chr12:121907780..121909749,6	MCF-7	breast:
16	chr12:121904771..121907217-chr12:121923867..121926222,2	MCF-7	breast:
17	chr12:121904083..121907294-chr12:121925168..121928223,3	MCF-7	breast:
18	chr12:121836857..121839364-chr12:121904146..121906392,3	MCF-7	breast:
19	chr12:121903708..121907527-chr12:121909090..121912019,3	K562	blood:
20	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
21	chr12:121905323..121907586-chr12:121967000..121969065,2	MCF-7	breast:
22	chr12:121904804..121906859-chr12:121924569..121927097,2	K562	blood:
23	chr12:121788063..121792251-chr12:121904093..121906414,4	MCF-7	breast:
24	chr12:121903618..121906631-chr12:121974140..121977262,7	MCF-7	breast:
25	chr12:121770793..121774780-chr12:121903688..121906322,3	MCF-7	breast:
26	chr12:121733438..121735016-chr12:121903974..121906506,3	MCF-7	breast:
27	chr12:121647824..121650350-chr12:121903258..121906224,2	K562	blood:
28	chr12:121837983..121842032-chr12:121901843..121907067,6	MCF-7	breast:
29	chr12:121904304..121906959-chr12:122109076..122111003,2	MCF-7	breast:
30	chr12:121902658..121907689-chr12:122234728..122241054,9	K562	blood:
31	chr12:121904480..121906372-chr12:121919407..121922126,2	MCF-7	breast:
32	chr12:121906006..121907893-chr12:121944276..121946845,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction
ENSG00000110931	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000135124	Chromatin interaction
ENSG00000170633	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000139718	Chromatin interaction
ENSG00000188735	Chromatin interaction
ENSG00000182500	Chromatin interaction
ENSG00000272849	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000139714	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11065522	1.00[CEU][hapmap]
rs11065538	0.87[EUR][1000 genomes]
rs11065546	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11065568	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11065574	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065588	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065597	1.00[AMR][1000 genomes]
rs11065601	1.00[AMR][1000 genomes]
rs12227224	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12228467	0.87[EUR][1000 genomes]
rs28538950	1.00[AMR][1000 genomes]
rs28617424	1.00[CEU][hapmap]
rs3817550	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7970637	1.00[AMR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121903800-121906400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr12:121904200-121906200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr12:121905400-121906200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:121905400-121906200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:121905400-121906200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr12:121905400-121906400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:121905400-121906400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:121905400-121906400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:121905400-121906400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr12:121905400-121906600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:121905600-121906200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:121905600-121906200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:121905600-121906200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr12:121905600-121906200	Flanking Active TSS	GM12878-XiMat	blood
15	chr12:121905600-121906400	Enhancers	Primary T cells from cord blood	blood
16	chr12:121905600-121906400	Enhancers	Fetal Kidney	kidney
17	chr12:121905600-121906600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr12:121905800-121906200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
19	chr12:121905800-121906200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr12:121905800-121906200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:121905800-121906200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:121905800-121906200	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr12:121905800-121906200	Active TSS	Brain Germinal Matrix	brain
24	chr12:121905800-121906200	Enhancers	Colon Smooth Muscle	Colon
25	chr12:121905800-121906200	Enhancers	Spleen	Spleen
26	chr12:121905800-121906200	Flanking Active TSS	K562	blood
27	chr12:121905800-121906400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr12:121905800-121906400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr12:121905800-121906400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr12:121905800-121906400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr12:121905800-121906400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr12:121905800-121906400	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr12:121905800-121906400	Enhancers	Fetal Brain Male	brain
34	chr12:121905800-121906400	Flanking Active TSS	Fetal Brain Female	brain
35	chr12:121905800-121906400	Enhancers	Stomach Mucosa	stomach
36	chr12:121905800-121906400	Flanking Active TSS	HepG2	liver
37	chr12:121905800-121906600	Enhancers	NHDF-Ad	bronchial
38	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:121906000-121906200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:121906000-121906200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr12:121906000-121906200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr12:121906000-121906200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
43	chr12:121906000-121906200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr12:121906000-121906200	Enhancers	Primary hematopoietic stem cells	blood
45	chr12:121906000-121906200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr12:121906000-121906200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:121906000-121906200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr12:121906000-121906200	Enhancers	Fetal Heart	heart
49	chr12:121906000-121906200	Enhancers	Fetal Intestine Large	intestine
50	chr12:121906000-121906200	Enhancers	Fetal Intestine Small	intestine

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