Variant report
| Variant | rs12228467 |
|---|---|
| Chromosome Location | chr12:121820600-121820601 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:121732297..121734840-chr12:121819846..121821658,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110931 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11065538 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11065539 | 0.96[ASN][1000 genomes] |
| rs11065541 | 0.96[ASN][1000 genomes] |
| rs11065542 | 0.89[ASN][1000 genomes] |
| rs11065544 | 0.93[ASN][1000 genomes] |
| rs11065545 | 0.94[ASN][1000 genomes] |
| rs11065546 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11065547 | 0.99[ASN][1000 genomes] |
| rs11065548 | 0.97[ASN][1000 genomes] |
| rs11065587 | 0.87[EUR][1000 genomes] |
| rs11065588 | 0.87[EUR][1000 genomes] |
| rs11065605 | 0.87[EUR][1000 genomes] |
| rs11065608 | 0.87[EUR][1000 genomes] |
| rs12227224 | 1.00[EUR][1000 genomes] |
| rs12309624 | 0.83[ASN][1000 genomes] |
| rs7137353 | 0.96[ASN][1000 genomes] |
| rs7297766 | 0.96[ASN][1000 genomes] |
| rs7301157 | 0.96[ASN][1000 genomes] |
| rs7304525 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7306516 | 0.96[ASN][1000 genomes] |
| rs7306651 | 0.96[ASN][1000 genomes] |
| rs7954868 | 0.94[ASN][1000 genomes] |
| rs7966085 | 0.99[ASN][1000 genomes] |
| rs7979163 | 0.99[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:121815400-121820800 | Weak transcription | Fetal Intestine Small | intestine |
