Variant report

Variant	rs11065592
Chromosome Location	chr12:121929355-121929356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121927625..121930242-chr12:121932378..121934082,2	K562	blood:
2	chr12:121762726..121764498-chr12:121927750..121930280,2	MCF-7	breast:
3	chr12:121927369..121930079-chr12:122237383..122239060,2	K562	blood:

Variant related genes	Relation type
ENSG00000139725	Chromatin interaction
ENSG00000212694	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11065593	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11065596	0.93[EUR][1000 genomes]
rs11065598	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11065604	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11837997	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57917116	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60437938	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6489814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6489815	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6489816	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7307400	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976858	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11065592	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
2	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
3	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
8	chr12:121908800-121931400	Weak transcription	Fetal Lung	lung
9	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
10	chr12:121913000-121938000	Weak transcription	Brain Angular Gyrus	brain
11	chr12:121915000-121938000	Weak transcription	Osteobl	bone
12	chr12:121918200-121938000	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:121919000-121937800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:121919800-121938000	Weak transcription	Ovary	ovary
15	chr12:121924600-121946600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:121925200-121936800	Strong transcription	Fetal Stomach	stomach
17	chr12:121925600-121938000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:121925600-121943200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:121926000-121946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:121926400-121938000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:121926400-121938000	Weak transcription	HSMMtube	muscle
22	chr12:121926600-121932000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:121926600-121936400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:121926800-121934200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr12:121927200-121932200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:121927400-121929800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr12:121927400-121930000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr12:121927400-121933800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:121927600-121929400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr12:121927600-121929400	Strong transcription	Liver	Liver
31	chr12:121927600-121929400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr12:121927600-121929600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr12:121927600-121929600	Enhancers	Primary B cells from cord blood	blood
34	chr12:121927600-121929600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:121927800-121929400	Flanking Active TSS	HepG2	liver
36	chr12:121927800-121929800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr12:121927800-121929800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:121927800-121930000	Strong transcription	Dnd41	blood
39	chr12:121928000-121929600	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr12:121928400-121933400	Weak transcription	Brain Substantia Nigra	brain
41	chr12:121928400-121934400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr12:121928400-121938000	Weak transcription	Right Ventricle	heart
43	chr12:121928600-121929600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr12:121928600-121929800	Enhancers	Primary T cells from cord blood	blood
45	chr12:121928600-121929800	Genic enhancers	GM12878-XiMat	blood
46	chr12:121928600-121930800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr12:121928600-121931000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:121928600-121933400	Weak transcription	Brain Hippocampus Middle	brain
49	chr12:121928600-121934800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr12:121928600-121937800	Weak transcription	Brain Germinal Matrix	brain

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