Variant report

Variant	rs6489816
Chromosome Location	chr12:121934573-121934574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121931595..121935193-chr12:122063683..122065952,3	MCF-7	breast:
2	chr12:121933880..121935985-chr12:121936373..121938069,2	K562	blood:

Variant related genes	Relation type
ENSG00000182500	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11065592	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11065593	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11065596	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065598	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065602	0.96[ASN][1000 genomes]
rs11065603	0.96[ASN][1000 genomes]
rs11065604	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065605	0.91[ASN][1000 genomes]
rs11065608	0.87[ASN][1000 genomes]
rs11837997	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57917116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60437938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6489814	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6489815	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7307400	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7309786	0.96[ASN][1000 genomes]
rs7316418	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7976858	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
2	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
3	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
5	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
6	chr12:121913000-121938000	Weak transcription	Brain Angular Gyrus	brain
7	chr12:121915000-121938000	Weak transcription	Osteobl	bone
8	chr12:121918200-121938000	Weak transcription	Colon Smooth Muscle	Colon
9	chr12:121919000-121937800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr12:121919800-121938000	Weak transcription	Ovary	ovary
11	chr12:121924600-121946600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:121925200-121936800	Strong transcription	Fetal Stomach	stomach
13	chr12:121925600-121938000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:121925600-121943200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:121926000-121946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:121926400-121938000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:121926400-121938000	Weak transcription	HSMMtube	muscle
18	chr12:121926600-121936400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:121928400-121938000	Weak transcription	Right Ventricle	heart
20	chr12:121928600-121934800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr12:121928600-121937800	Weak transcription	Brain Germinal Matrix	brain
22	chr12:121928600-121937800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr12:121928600-121938000	Weak transcription	Brain Anterior Caudate	brain
24	chr12:121928600-121941400	Weak transcription	Gastric	stomach
25	chr12:121928600-121945200	Weak transcription	Lung	lung
26	chr12:121928600-121946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:121928600-121965800	Weak transcription	Hela-S3	cervix
28	chr12:121928800-121937600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr12:121928800-121937800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:121928800-121937800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:121928800-121938000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr12:121928800-121938000	Weak transcription	Adipose Nuclei	Adipose
33	chr12:121928800-121938000	Weak transcription	Fetal Heart	heart
34	chr12:121928800-121946000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr12:121928800-121946400	Weak transcription	NHLF	lung
36	chr12:121929000-121934600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr12:121929000-121934600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:121929000-121938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:121929000-121938000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr12:121929000-121939800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr12:121929000-121946200	Weak transcription	Esophagus	oesophagus
42	chr12:121929000-121946400	Weak transcription	Placenta	Placenta
43	chr12:121929200-121934600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr12:121929200-121936800	Strong transcription	Fetal Intestine Small	intestine
45	chr12:121929200-121937800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:121929200-121938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:121929200-121938000	Weak transcription	Fetal Intestine Large	intestine
48	chr12:121929200-121938000	Weak transcription	Fetal Kidney	kidney
49	chr12:121929200-121938000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr12:121929200-121938200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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