Variant report

Variant	rs7309786
Chromosome Location	chr12:121938188-121938189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121937924..121939615-chr12:121975554..121978350,2	MCF-7	breast:
2	chr12:121937416..121938308-chr12:122120124..122120655,4	K562	blood:
3	chr12:121936319..121939540-chr12:121952652..121957532,4	MCF-7	breast:
4	chr12:121937349..121938292-chr12:122119734..122120626,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11065568	1.00[CEU][hapmap]
rs11065588	0.90[GIH][hapmap]
rs11065596	0.97[ASN][1000 genomes]
rs11065597	0.92[EUR][1000 genomes]
rs11065598	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11065601	0.92[EUR][1000 genomes]
rs11065602	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065603	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065604	0.97[ASN][1000 genomes]
rs11065605	0.95[ASN][1000 genomes]
rs11065608	0.90[ASN][1000 genomes]
rs11837997	0.98[ASN][1000 genomes]
rs28617424	0.83[CHD][hapmap];0.90[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap]
rs60437938	0.99[ASN][1000 genomes]
rs6489815	0.93[JPT][hapmap]
rs6489816	0.96[ASN][1000 genomes]
rs7137329	1.00[MEX][hapmap]
rs7307400	0.93[JPT][hapmap]
rs7316418	0.86[JPT][hapmap]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
2	chr12:121924600-121946600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:121925600-121943200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:121926000-121946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:121928600-121941400	Weak transcription	Gastric	stomach
6	chr12:121928600-121945200	Weak transcription	Lung	lung
7	chr12:121928600-121946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:121928600-121965800	Weak transcription	Hela-S3	cervix
9	chr12:121928800-121946000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:121928800-121946400	Weak transcription	NHLF	lung
11	chr12:121929000-121939800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:121929000-121946200	Weak transcription	Esophagus	oesophagus
13	chr12:121929000-121946400	Weak transcription	Placenta	Placenta
14	chr12:121929200-121938200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:121929200-121938600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr12:121929200-121939000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:121929200-121939600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:121929200-121946400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:121929200-121954200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr12:121931600-121941000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:121932000-121941400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr12:121932000-121974400	Weak transcription	NHEK	skin
23	chr12:121933800-121939600	Weak transcription	Spleen	Spleen
24	chr12:121934400-121943200	Weak transcription	Primary T cells from cord blood	blood
25	chr12:121934800-121938400	Weak transcription	Thymus	Thymus
26	chr12:121934800-121968200	Weak transcription	Small Intestine	intestine
27	chr12:121935000-121939800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr12:121935000-121946600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr12:121935000-121947200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr12:121935000-121951800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:121935200-121939000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr12:121935200-121939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:121935200-121939400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr12:121935200-121939800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr12:121935200-121946400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:121936200-121941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:121936200-121943400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr12:121936400-121938200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:121936400-121939800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:121936400-121939800	Weak transcription	Dnd41	blood
41	chr12:121936600-121939800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:121936600-121939800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr12:121937400-121938400	Enhancers	Primary T cells fromperipheralblood	blood
44	chr12:121937600-121938200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr12:121937600-121938600	Enhancers	Primary B cells from peripheral blood	blood
46	chr12:121937800-121938200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:121937800-121938200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr12:121937800-121938200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr12:121937800-121938400	Active TSS	Aorta	Aorta
50	chr12:121937800-121938400	Active TSS	Duodenum Smooth Muscle	Duodenum

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