Variant report

Variant	rs11068185
Chromosome Location	chr12:117220406-117220407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10850709	0.80[ASN][1000 genomes]
rs10850710	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10850711	0.82[ASN][1000 genomes]
rs10850713	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10850714	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10850716	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068174	0.88[ASN][1000 genomes]
rs11068177	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068182	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068187	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068189	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068192	0.96[ASN][1000 genomes]
rs11503182	0.80[ASN][1000 genomes]
rs12231554	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12231952	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12296993	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12302528	0.80[ASN][1000 genomes]
rs12305605	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12308877	0.80[ASN][1000 genomes]
rs12309159	1.00[ASN][1000 genomes]
rs12312295	1.00[ASN][1000 genomes]
rs12314176	0.80[ASN][1000 genomes]
rs12322695	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12426049	0.96[ASN][1000 genomes]
rs34454980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174906	0.80[ASN][1000 genomes]
rs56692573	1.00[ASN][1000 genomes]
rs58367668	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137138	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7307465	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73405110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1039046	chr12:117170989-117225635	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117177000-117224400	Weak transcription	Brain Substantia Nigra	brain
2	chr12:117177200-117221000	Weak transcription	Fetal Brain Male	brain
3	chr12:117177400-117225800	Weak transcription	HepG2	liver
4	chr12:117191200-117221000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117198000-117256200	Weak transcription	Hela-S3	cervix
6	chr12:117198200-117233600	Weak transcription	Fetal Stomach	stomach
7	chr12:117198200-117236600	Weak transcription	A549	lung
8	chr12:117198600-117223800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:117198600-117233600	Weak transcription	Right Atrium	heart
10	chr12:117198800-117220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:117209800-117232600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:117213400-117226600	Weak transcription	Fetal Intestine Small	intestine
13	chr12:117213800-117223400	Weak transcription	Placenta	Placenta
14	chr12:117215800-117221400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr12:117216000-117222000	Weak transcription	K562	blood
16	chr12:117216200-117222800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:117216200-117225400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:117216600-117220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:117216600-117226800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:117216800-117223200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:117216800-117223600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:117216800-117223600	Strong transcription	Fetal Brain Female	brain
23	chr12:117216800-117224400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:117216800-117225400	Strong transcription	Brain Germinal Matrix	brain
25	chr12:117216800-117225600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr12:117216800-117225600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:117216800-117229600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:117217000-117222200	Strong transcription	Thymus	Thymus
29	chr12:117217000-117222400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:117217000-117223400	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr12:117217400-117224600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:117217400-117226200	Weak transcription	Aorta	Aorta
33	chr12:117217600-117226400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:117218000-117221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr12:117218000-117225800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr12:117218200-117224000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr12:117218600-117220800	Weak transcription	Primary B cells from cord blood	blood
38	chr12:117219000-117220600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:117219000-117224400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:117219000-117226000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr12:117219200-117220600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr12:117219200-117220600	Weak transcription	Brain Hippocampus Middle	brain
43	chr12:117219200-117221000	Weak transcription	Brain Angular Gyrus	brain
44	chr12:117219200-117225600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:117219400-117220800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr12:117219600-117221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:117219600-117221000	Weak transcription	Brain Anterior Caudate	brain
48	chr12:117219600-117221200	Weak transcription	Primary T cells from cord blood	blood
49	chr12:117219600-117221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr12:117219600-117224400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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