The 2.0 version of rSNPBase

Variant report

Variant rs12309159
Chromosome Location chr12:117226028-117226029
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:117198000-117256200 Weak transcription Hela-S3 cervix
2 chr12:117198200-117233600 Weak transcription Fetal Stomach stomach
3 chr12:117198200-117236600 Weak transcription A549 lung
4 chr12:117198600-117233600 Weak transcription Right Atrium heart
5 chr12:117209800-117232600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr12:117213400-117226600 Weak transcription Fetal Intestine Small intestine
7 chr12:117216600-117226800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr12:117216800-117229600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr12:117217400-117226200 Weak transcription Aorta Aorta
10 chr12:117217600-117226400 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr12:117220200-117228000 Weak transcription HSMMtube muscle
12 chr12:117221200-117236800 Weak transcription Brain Hippocampus Middle brain
13 chr12:117221600-117226200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr12:117221800-117226400 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr12:117222000-117230200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr12:117222000-117248000 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr12:117222200-117226600 Weak transcription Fetal Muscle Trunk muscle
18 chr12:117222200-117231000 Weak transcription Fetal Brain Male brain
19 chr12:117222200-117235400 Weak transcription Thymus Thymus
20 chr12:117222400-117236600 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr12:117222400-117236800 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr12:117222600-117236600 Weak transcription Brain Angular Gyrus brain
23 chr12:117222600-117236600 Weak transcription Brain Anterior Caudate brain
24 chr12:117222800-117236600 Weak transcription Brain Inferior Temporal Lobe brain
25 chr12:117222800-117236600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr12:117223400-117234400 Weak transcription H9 Cell Line embryonic stem cell
27 chr12:117223600-117227800 Weak transcription Fetal Brain Female brain
28 chr12:117223600-117228000 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr12:117223600-117231800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr12:117223600-117246200 Weak transcription H1 Cell Line embryonic stem cell
31 chr12:117223800-117230000 Weak transcription GM12878-XiMat blood
32 chr12:117224000-117229200 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr12:117224400-117226600 Strong transcription Dnd41 blood
34 chr12:117224400-117227000 Strong transcription Primary T cells from cord blood blood
35 chr12:117224800-117226400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr12:117224800-117226600 Weak transcription Spleen Spleen
37 chr12:117225000-117236600 Weak transcription Primary B cells from cord blood blood
38 chr12:117225000-117237600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr12:117225200-117227600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr12:117225200-117236600 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr12:117225200-117236800 Weak transcription Brain Cingulate Gyrus brain
42 chr12:117225200-117256200 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr12:117225400-117228400 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr12:117225400-117229400 Weak transcription Fetal Thymus thymus
45 chr12:117225400-117234000 Weak transcription Brain Germinal Matrix brain
46 chr12:117225600-117227800 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr12:117225600-117228600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr12:117225600-117233000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr12:117225600-117235400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr12:117226000-117226400 Enhancers Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015