Variant report

Variant	rs11068269
Chromosome Location	chr12:117405568-117405569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117402720..117404919-chr12:117405242..117407229,2	MCF-7	breast:
2	chr12:117396665..117399645-chr12:117404294..117406013,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11829895	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11830219	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11832649	1.00[CEU][hapmap]
rs11835474	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1320027	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16947216	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16947228	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16947235	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16947246	1.00[EUR][1000 genomes]
rs35749640	1.00[EUR][1000 genomes]
rs36021180	1.00[EUR][1000 genomes]
rs3935958	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3956801	1.00[EUR][1000 genomes]
rs55693524	1.00[EUR][1000 genomes]
rs56103902	1.00[EUR][1000 genomes]
rs56721166	1.00[EUR][1000 genomes]
rs7313865	1.00[EUR][1000 genomes]
rs7964659	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7977227	1.00[EUR][1000 genomes]
rs7980519	1.00[CEU][hapmap]
rs937567	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs952934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv519118	chr12:117386085-117521180	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117365000-117406000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:117382600-117408000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:117384400-117411200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:117384600-117427400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:117384800-117407400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:117384800-117411000	Weak transcription	Hela-S3	cervix
7	chr12:117384800-117450400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:117385200-117406200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:117385200-117410200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:117385200-117410600	Weak transcription	Fetal Kidney	kidney
11	chr12:117385800-117408200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:117387800-117407000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:117387800-117407400	Weak transcription	Aorta	Aorta
14	chr12:117387800-117463600	Weak transcription	HMEC	breast
15	chr12:117393000-117407600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:117393800-117471000	Weak transcription	Small Intestine	intestine
17	chr12:117394600-117415400	Weak transcription	HSMMtube	muscle
18	chr12:117397000-117429200	Weak transcription	Right Ventricle	heart
19	chr12:117397000-117442400	Weak transcription	Colonic Mucosa	Colon
20	chr12:117397200-117410400	Weak transcription	Pancreas	Pancrea
21	chr12:117398000-117409000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:117398200-117417400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:117400400-117412000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:117400400-117417800	Weak transcription	K562	blood
25	chr12:117400600-117405600	Strong transcription	HSMM	muscle
26	chr12:117400600-117406400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr12:117400600-117407200	Weak transcription	Brain Hippocampus Middle	brain
28	chr12:117400600-117407600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr12:117400800-117405800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr12:117400800-117406200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr12:117400800-117415400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:117401000-117407400	Weak transcription	Gastric	stomach
33	chr12:117401000-117407400	Weak transcription	Psoas Muscle	Psoas
34	chr12:117401000-117409000	Weak transcription	GM12878-XiMat	blood
35	chr12:117401400-117407800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr12:117401400-117408000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:117401400-117408200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:117401600-117405600	Strong transcription	A549	lung
39	chr12:117401600-117405600	Strong transcription	Osteobl	bone
40	chr12:117401600-117407000	Strong transcription	Primary B cells from cord blood	blood
41	chr12:117401600-117408400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:117401600-117408400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr12:117401600-117408800	Strong transcription	Primary T cells from cord blood	blood
44	chr12:117401800-117405600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:117402000-117405600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr12:117402000-117406000	Strong transcription	Fetal Muscle Leg	muscle
47	chr12:117402000-117407600	Strong transcription	Fetal Intestine Large	intestine
48	chr12:117402000-117408000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr12:117402200-117408000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:117402200-117408200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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