Variant report

No.	Distal block	Cell Line	Cell type
1	chr12:117341797..117344176-chr12:117354858..117357748,2	K562	blood:
2	chr12:117341741..117342542-chr19:56135630..56136244,2	NB4	blood:
3	chr12:117336002..117338269-chr12:117340387..117342340,2	K562	blood:

Variant related genes	Relation type
ENSG00000179922	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11068233	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs11068265	0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[ASN][1000 genomes]
rs11068267	0.82[ASN][1000 genomes]
rs11068268	0.82[ASN][1000 genomes]
rs11068269	1.00[CEU][hapmap]
rs11068275	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs11068285	0.82[ASN][1000 genomes]
rs11068288	0.82[ASN][1000 genomes]
rs11829895	1.00[CEU][hapmap]
rs11830219	1.00[CEU][hapmap]
rs11832649	1.00[CEU][hapmap]
rs11835474	1.00[CEU][hapmap]
rs12230860	0.82[ASN][1000 genomes]
rs1320027	1.00[CEU][hapmap]
rs16947216	1.00[CEU][hapmap]
rs16947228	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16947235	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17582998	0.82[ASN][1000 genomes]
rs17583110	0.82[ASN][1000 genomes]
rs3935958	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs72487544	0.82[ASN][1000 genomes]
rs7964659	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs937567	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs952934	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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