Variant report

Variant	rs11068490
Chromosome Location	chr12:117878658-117878659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11068499	0.85[YRI][hapmap]
rs16947370	1.00[EUR][1000 genomes]
rs16947421	1.00[EUR][1000 genomes]
rs7961096	1.00[EUR][1000 genomes]
rs9658301	1.00[EUR][1000 genomes]
rs9658422	1.00[EUR][1000 genomes]
rs9658426	1.00[EUR][1000 genomes]
rs9658465	1.00[EUR][1000 genomes]
rs9658479	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv528231	chr12:117877110-117879236	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117874400-117880400	Enhancers	Fetal Muscle Leg	muscle
2	chr12:117875400-117878800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr12:117876600-117879600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:117876800-117878800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr12:117877400-117879200	Weak transcription	Brain Anterior Caudate	brain
6	chr12:117877400-117888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:117877800-117879400	Weak transcription	Brain Hippocampus Middle	brain
8	chr12:117877800-117879600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:117878000-117879600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:117878600-117880000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr12:117878600-117885800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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