Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117891223..117893076-chr12:117894478..117896317,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOS1-2	chr12:117890859-117896866	NONHSAT031009

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10507280	0.93[CHB][hapmap];0.92[CHD][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10744897	1.00[JPT][hapmap]
rs10774926	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10850827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10850828	1.00[JPT][hapmap]
rs1104863	0.85[CHD][hapmap]
rs11068500	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs11068501	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1111578	0.85[CHD][hapmap]
rs11613545	0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12302697	0.93[CHB][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12311157	0.81[AMR][1000 genomes]
rs12312120	0.81[AMR][1000 genomes]
rs12320449	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12813784	0.93[CHB][hapmap]
rs12813801	0.90[CHB][hapmap]
rs17618096	0.81[AMR][1000 genomes]
rs41279104	0.81[AMR][1000 genomes]
rs4766851	1.00[JPT][hapmap]
rs61071715	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306852	1.00[JPT][hapmap]
rs73208197	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11068499	NOS1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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