Variant report
| Variant | rs7306852 |
|---|---|
| Chromosome Location | chr12:117889383-117889384 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255686 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10744897 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10774922 | 0.97[EUR][1000 genomes] |
| rs10774923 | 0.97[EUR][1000 genomes] |
| rs10774924 | 0.97[EUR][1000 genomes] |
| rs10774925 | 0.97[EUR][1000 genomes] |
| rs10850825 | 0.89[EUR][1000 genomes] |
| rs10850827 | 0.90[JPT][hapmap] |
| rs10850828 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10850831 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11068491 | 0.96[EUR][1000 genomes] |
| rs11068499 | 1.00[JPT][hapmap] |
| rs11068503 | 0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap] |
| rs11612731 | 0.93[EUR][1000 genomes] |
| rs12320449 | 0.90[JPT][hapmap] |
| rs3844049 | 0.92[EUR][1000 genomes] |
| rs3844050 | 0.92[EUR][1000 genomes] |
| rs3844051 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3850606 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4766851 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4767540 | 0.93[EUR][1000 genomes] |
| rs4767542 | 0.98[EUR][1000 genomes] |
| rs4767543 | 0.97[EUR][1000 genomes] |
| rs4767544 | 0.97[EUR][1000 genomes] |
| rs4767545 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7964940 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv560386 | chr12:117822187-117991547 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv899543 | chr12:117882412-117925208 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7306852 | NOS1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:117888200-117889800 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
