Variant report

Variant	rs10850828
Chromosome Location	chr12:117889769-117889770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOS1-1	chr12:117889506-117889975	NONHSAT030989
2	lnc-NOS1-1	chr12:117889507-117890028	NONHSAT031006

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10744897	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774922	0.97[EUR][1000 genomes]
rs10774923	0.97[EUR][1000 genomes]
rs10774924	0.97[EUR][1000 genomes]
rs10774925	0.97[EUR][1000 genomes]
rs10850825	0.89[EUR][1000 genomes]
rs10850827	0.90[JPT][hapmap]
rs10850831	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11068491	0.97[EUR][1000 genomes]
rs11068499	1.00[JPT][hapmap]
rs11068503	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap]
rs11612731	0.93[EUR][1000 genomes]
rs12320449	0.90[JPT][hapmap]
rs3844049	0.93[EUR][1000 genomes]
rs3844050	0.93[EUR][1000 genomes]
rs3844051	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3850606	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4766851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767540	0.94[EUR][1000 genomes]
rs4767542	0.98[EUR][1000 genomes]
rs4767543	0.98[EUR][1000 genomes]
rs4767544	0.97[EUR][1000 genomes]
rs4767545	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7306852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7964940	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10850828	NOS1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117888200-117889800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:117889400-117890000	Enhancers	Lung	lung

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