Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10507280	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10774926	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10850827	0.93[CHB][hapmap]
rs10850832	0.81[ASN][1000 genomes]
rs1104862	0.90[JPT][hapmap]
rs1104863	0.89[JPT][hapmap]
rs11068499	0.93[CHB][hapmap]
rs11068500	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11068501	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11068503	1.00[JPT][hapmap]
rs11068505	0.86[ASN][1000 genomes]
rs11068506	0.87[ASN][1000 genomes]
rs1111578	0.89[JPT][hapmap]
rs11613545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12302697	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12304889	0.85[ASN][1000 genomes]
rs12320449	0.93[CHB][hapmap]
rs12813801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861901	0.90[JPT][hapmap]
rs61071715	0.95[ASN][1000 genomes]
rs73208197	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:117897000-117908800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:117898000-117921400	Weak transcription	Brain Angular Gyrus	brain
4	chr12:117898800-117911600	Weak transcription	HUVEC	blood vessel
5	chr12:117899600-117905800	Weak transcription	Brain Anterior Caudate	brain
6	chr12:117903000-117904800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117903200-117919600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:117904200-117906000	Enhancers	Liver	Liver
9	chr12:117904400-117904800	Bivalent Enhancer	HepG2	liver
10	chr12:117904400-117905000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr12:117904600-117905200	Enhancers	Pancreas	Pancrea
12	chr12:117904600-117906200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:117904600-117906200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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