Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117907351..117909804-chr12:117912936..117915339,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507280	0.92[CHD][hapmap];0.80[ASN][1000 genomes]
rs10774926	0.92[CHD][hapmap];0.92[GIH][hapmap];0.82[ASN][1000 genomes]
rs10850832	0.92[ASN][1000 genomes]
rs1104862	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1104863	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11068499	0.85[CHD][hapmap]
rs11068500	0.92[CHD][hapmap]
rs11068501	0.92[CHD][hapmap];0.92[GIH][hapmap];0.82[ASN][1000 genomes]
rs11068503	0.89[JPT][hapmap]
rs11068506	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1111578	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11613545	0.92[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12302697	0.80[ASN][1000 genomes]
rs12304889	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12813784	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12813801	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1580855	0.88[ASN][1000 genomes]
rs3861901	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs61071715	0.86[ASN][1000 genomes]
rs7133455	0.88[ASN][1000 genomes]
rs7298492	0.88[ASN][1000 genomes]
rs73208197	0.82[ASN][1000 genomes]
rs73210107	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:117897000-117908800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:117898000-117921400	Weak transcription	Brain Angular Gyrus	brain
4	chr12:117898800-117911600	Weak transcription	HUVEC	blood vessel
5	chr12:117903200-117919600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:117904800-117908800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr12:117905000-117909000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:117905000-117923800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:117905200-117908600	Weak transcription	Pancreas	Pancrea
10	chr12:117905800-117908800	Weak transcription	A549	lung
11	chr12:117906000-117908800	Weak transcription	Brain Anterior Caudate	brain
12	chr12:117906200-117908800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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