Variant report

Variant	rs10774926
Chromosome Location	chr12:117897323-117897324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10507280	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10850827	0.92[CEU][hapmap];0.93[CHB][hapmap];0.85[EUR][1000 genomes]
rs1104863	0.92[CHD][hapmap];0.86[GIH][hapmap]
rs11068499	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11068500	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11068501	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068503	0.89[JPT][hapmap]
rs11068505	0.82[ASN][1000 genomes]
rs11068506	0.81[ASN][1000 genomes]
rs1111578	0.92[CHD][hapmap];0.85[GIH][hapmap]
rs11613545	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12302697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12304889	0.83[ASN][1000 genomes]
rs12320449	0.93[CHB][hapmap]
rs12813784	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12813801	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs61071715	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73208197	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10774926	NOS1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117894200-117904600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:117897000-117898400	Weak transcription	Fetal Stomach	stomach
4	chr12:117897000-117908800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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