Variant report

Variant	rs11068500
Chromosome Location	chr12:117894232-117894233
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOS1-2	chr12:117890859-117896866	NONHSAT031009

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507280	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10774926	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10850827	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1104863	0.92[CHD][hapmap]
rs11068499	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[ASN][1000 genomes]
rs11068501	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11068503	0.89[JPT][hapmap]
rs11068506	0.80[ASN][1000 genomes]
rs1111578	0.92[CHD][hapmap]
rs11613545	0.92[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs12302697	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12311157	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12312120	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12316771	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12320449	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12813784	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12813801	0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17618096	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34731287	0.90[EUR][1000 genomes]
rs41279104	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61071715	0.93[ASN][1000 genomes]
rs73208197	0.95[ASN][1000 genomes]
rs900623	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3394770	chr12:117894123-117894306	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117894200-117904600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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