Variant report

Variant	rs61071715
Chromosome Location	chr12:117902465-117902466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10507280	0.94[ASN][1000 genomes]
rs10774926	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10850827	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10850832	0.81[ASN][1000 genomes]
rs11068499	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11068500	0.93[ASN][1000 genomes]
rs11068501	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11068505	0.86[ASN][1000 genomes]
rs11068506	0.87[ASN][1000 genomes]
rs11613545	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302697	0.94[ASN][1000 genomes]
rs12304889	0.85[ASN][1000 genomes]
rs12813784	0.95[ASN][1000 genomes]
rs12813801	0.95[ASN][1000 genomes]
rs73208197	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117894200-117904600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:117897000-117908800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:117898000-117921400	Weak transcription	Brain Angular Gyrus	brain
5	chr12:117898800-117911600	Weak transcription	HUVEC	blood vessel
6	chr12:117899600-117905800	Weak transcription	Brain Anterior Caudate	brain
7	chr12:117901800-117904600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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