Variant report

Variant	rs11068529
Chromosome Location	chr12:117961876-117961877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11068525	1.00[EUR][1000 genomes]
rs11068526	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11068527	1.00[EUR][1000 genomes]
rs73403319	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73403328	0.88[AFR][1000 genomes]
rs73403396	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117953000-117962200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:117953000-117995600	Weak transcription	Brain Angular Gyrus	brain
4	chr12:117953800-117962000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:117954200-117966000	Weak transcription	Left Ventricle	heart
6	chr12:117956800-117962400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:117957000-117995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:117957600-117963800	Weak transcription	Fetal Heart	heart
9	chr12:117960200-117964400	Weak transcription	Gastric	stomach
10	chr12:117960200-117965600	Weak transcription	Fetal Brain Female	brain
11	chr12:117960800-117962800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
12	chr12:117960800-117963600	Weak transcription	Pancreas	Pancrea
13	chr12:117961200-117962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:117961200-117962000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:117961200-117963600	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:117961200-117964400	Weak transcription	Psoas Muscle	Psoas
17	chr12:117961600-117965000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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