Variant report

Variant	rs73403396
Chromosome Location	chr12:117963912-117963913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11068525	1.00[EUR][1000 genomes]
rs11068526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068527	1.00[EUR][1000 genomes]
rs11068529	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56138419	1.00[AMR][1000 genomes]
rs56863396	1.00[AMR][1000 genomes]
rs57524460	1.00[AMR][1000 genomes]
rs58706184	1.00[AMR][1000 genomes]
rs60231037	1.00[AMR][1000 genomes]
rs7312290	1.00[AMR][1000 genomes]
rs73399543	1.00[AMR][1000 genomes]
rs73401413	1.00[AMR][1000 genomes]
rs73403319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117953000-117995600	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117954200-117966000	Weak transcription	Left Ventricle	heart
4	chr12:117957000-117995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:117960200-117964400	Weak transcription	Gastric	stomach
6	chr12:117960200-117965600	Weak transcription	Fetal Brain Female	brain
7	chr12:117961200-117964400	Weak transcription	Psoas Muscle	Psoas
8	chr12:117961600-117965000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr12:117963000-117977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:117963600-117964000	Enhancers	Fetal Intestine Large	intestine
11	chr12:117963600-117964800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:117963600-117964800	Enhancers	Fetal Muscle Leg	muscle
13	chr12:117963600-117965200	Enhancers	Pancreas	Pancrea
14	chr12:117963600-117968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr12:117963600-117979200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr12:117963800-117964000	Enhancers	Fetal Heart	heart
17	chr12:117963800-117964400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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