Variant report

Variant	rs73401413
Chromosome Location	chr12:117921080-117921081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1093305	0.83[AFR][1000 genomes]
rs11068526	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56138419	1.00[AMR][1000 genomes]
rs56863396	1.00[AMR][1000 genomes]
rs57524460	1.00[AMR][1000 genomes]
rs58706184	1.00[AMR][1000 genomes]
rs60231037	1.00[AMR][1000 genomes]
rs7312290	1.00[AMR][1000 genomes]
rs73399543	1.00[AMR][1000 genomes]
rs73403319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403328	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117896000-117923800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:117898000-117921400	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117905000-117923800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:117909200-117921400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:117909200-117925200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:117909200-117925200	Weak transcription	Pancreas	Pancrea
7	chr12:117914600-117924200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:117916200-117925200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:117920800-117922000	Weak transcription	A549	lung
10	chr12:117920800-117932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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