Variant report

Variant	rs11068950
Chromosome Location	chr12:118876253-118876254
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11068869	1.00[EUR][1000 genomes]
rs11068875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068894	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11068929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11835933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311104	1.00[EUR][1000 genomes]
rs12314138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318403	1.00[EUR][1000 genomes]
rs12319261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35214062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6490174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7132122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7136936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7137739	0.83[AMR][1000 genomes]
rs7306323	1.00[EUR][1000 genomes]
rs7308927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899547	chr12:118791441-118896304	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118871200-118881800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118876000-118877800	Weak transcription	NHDF-Ad	bronchial
3	chr12:118876000-118879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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