Variant report

No.	Distal block	Cell Line	Cell type
1	chr12:119417707..119418245-chr12:119474754..119475351,2	MCF-7	breast:
2	chr12:118842456..118843402-chr12:119474125..119474951,3	MCF-7	breast:
3	chr12:119151580..119152192-chr12:119474698..119475328,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CIT-6	chr12:119474590-119474772	ENSG00000257095.1

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10775014	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10775015	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10851062	0.89[ASN][1000 genomes]
rs12099608	0.89[ASN][1000 genomes]
rs12321836	0.83[ASN][1000 genomes]
rs1405047	0.81[ASN][1000 genomes]
rs1525945	0.89[ASN][1000 genomes]
rs1525946	0.86[ASN][1000 genomes]
rs1525947	0.86[ASN][1000 genomes]
rs1525948	0.81[ASN][1000 genomes]
rs1917879	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1976923	0.81[ASN][1000 genomes]
rs2177838	0.83[ASN][1000 genomes]
rs2393466	0.89[ASN][1000 genomes]
rs4526826	0.89[ASN][1000 genomes]
rs4767758	0.83[ASN][1000 genomes]
rs4767759	0.89[ASN][1000 genomes]
rs4767760	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490227	0.83[ASN][1000 genomes]
rs6490228	0.89[ASN][1000 genomes]
rs6490229	0.89[ASN][1000 genomes]
rs66694569	0.83[ASN][1000 genomes]
rs7133570	0.81[ASN][1000 genomes]
rs7137807	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294812	0.89[ASN][1000 genomes]
rs7306122	0.89[ASN][1000 genomes]
rs7306928	0.81[ASN][1000 genomes]
rs7308063	0.89[ASN][1000 genomes]
rs7312999	0.86[ASN][1000 genomes]
rs7313274	0.89[ASN][1000 genomes]
rs7962190	0.89[ASN][1000 genomes]
rs869716	0.89[ASN][1000 genomes]
rs940913	0.89[ASN][1000 genomes]
rs940914	0.89[ASN][1000 genomes]
rs940915	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041602	chr12:119472215-119499329	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119458800-119474800	Weak transcription	Fetal Brain Female	brain
2	chr12:119474400-119474800	Enhancers	Brain Cingulate Gyrus	brain
3	chr12:119474400-119475000	Enhancers	Brain Germinal Matrix	brain
4	chr12:119474400-119479400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:119474600-119474800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:119474600-119475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:119474600-119475200	Enhancers	Brain Angular Gyrus	brain

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