Variant report

Variant	rs1917879
Chromosome Location	chr12:119450613-119450614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119449958..119452455-chr12:119456708..119459020,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10775014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10851061	0.83[CHD][hapmap]
rs10851062	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11069220	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11069224	0.86[ASN][1000 genomes]
rs11069226	0.86[ASN][1000 genomes]
rs11069233	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12099608	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12321836	0.86[ASN][1000 genomes]
rs1405047	0.89[ASN][1000 genomes]
rs1405049	0.89[CHB][hapmap]
rs1525945	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525946	0.83[ASN][1000 genomes]
rs1525947	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1525948	0.89[ASN][1000 genomes]
rs1525957	0.86[ASN][1000 genomes]
rs1976923	0.89[ASN][1000 genomes]
rs2177838	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2393466	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4357755	0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4523746	0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4526826	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4767758	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4767759	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4767760	0.92[ASN][1000 genomes]
rs6490220	0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6490221	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6490227	0.86[ASN][1000 genomes]
rs6490228	0.81[ASN][1000 genomes]
rs6490229	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs66694569	0.86[ASN][1000 genomes]
rs7133570	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7137807	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7294812	0.81[ASN][1000 genomes]
rs7298478	0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7306122	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7306928	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7308063	0.81[ASN][1000 genomes]
rs7313274	0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7962190	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7976598	0.90[JPT][hapmap]
rs869716	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs940913	0.81[ASN][1000 genomes]
rs940914	0.81[ASN][1000 genomes]
rs940915	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046251	chr12:119353064-119467301	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv541615	chr12:119353064-119467301	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119449200-119451000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr12:119449200-119451200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:119449400-119450800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:119449400-119451000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:119449600-119451000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:119449600-119451000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:119449600-119451000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:119449600-119451000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:119449600-119451200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr12:119450000-119450800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:119450200-119456800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:119450400-119450800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:119450400-119451000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr12:119450600-119451000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:119450600-119456400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links