Variant report

Variant	rs11069818
Chromosome Location	chr13:110651131-110651132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:110651119..110651723-chr13:110726182..110726944,2	MCF-7	breast:
2	chr13:110521072..110521899-chr13:110651072..110651611,2	MCF-7	breast:
3	chr13:109571462..109572159-chr13:110651100..110651627,2	MCF-7	breast:
4	chr13:110624570..110627835-chr13:110649740..110653862,3	MCF-7	breast:
5	chr13:109568410..109572256-chr13:110650855..110652564,3	MCF-7	breast:
6	chr13:110436934..110441220-chr13:110649910..110655074,7	MCF-7	breast:
7	chr13:110648675..110651623-chr13:110654497..110656407,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10450818	0.81[AFR][1000 genomes]
rs11616866	0.81[AFR][1000 genomes]
rs11617996	0.81[AFR][1000 genomes]
rs11619058	0.81[AFR][1000 genomes]
rs11619827	0.81[AFR][1000 genomes]
rs12427756	0.81[AFR][1000 genomes]
rs12429859	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3995573	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773106	0.81[AFR][1000 genomes]
rs4773107	0.81[AFR][1000 genomes]
rs55799126	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7982180	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7990049	0.81[AFR][1000 genomes]
rs7990936	0.81[AFR][1000 genomes]
rs9559699	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110647600-110651400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:110649200-110652600	Enhancers	Liver	Liver
3	chr13:110649800-110652600	Enhancers	Adipose Nuclei	Adipose
4	chr13:110649800-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:110649800-110655000	Enhancers	Hela-S3	cervix
6	chr13:110650400-110651400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:110650400-110651600	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:110650400-110652200	Enhancers	Fetal Kidney	kidney
9	chr13:110650400-110655000	Enhancers	HMEC	breast
10	chr13:110650600-110651200	Flanking Active TSS	A549	lung
11	chr13:110650600-110651400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:110650600-110651600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:110650600-110651600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:110650600-110652600	Enhancers	NHEK	skin
15	chr13:110650800-110651800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:110650800-110651800	Enhancers	NH-A	brain
17	chr13:110650800-110652600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:110650800-110655400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:110651000-110651600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:110651000-110652000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:110651000-110652200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr13:110651000-110654400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:110651000-110654800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links