Variant report

Variant	rs3995573
Chromosome Location	chr13:110648819-110648820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10450818	0.82[AFR][1000 genomes]
rs11069818	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616866	0.82[AFR][1000 genomes]
rs11617996	0.82[AFR][1000 genomes]
rs11619058	0.82[AFR][1000 genomes]
rs11619827	0.83[AFR][1000 genomes]
rs12427756	0.83[AFR][1000 genomes]
rs12429859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4773106	0.83[AFR][1000 genomes]
rs4773107	0.83[AFR][1000 genomes]
rs55799126	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7982180	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7990049	0.83[AFR][1000 genomes]
rs7990936	0.83[AFR][1000 genomes]
rs9559699	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110638400-110650800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110643000-110649800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110647400-110649800	Weak transcription	Aorta	Aorta
4	chr13:110647600-110651000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:110647600-110651400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:110648600-110650600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links