Variant report

Variant	rs11069820
Chromosome Location	chr13:110714668-110714669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4459422	0.87[ASN][1000 genomes]
rs4503663	0.99[ASN][1000 genomes]
rs4773118	0.87[ASN][1000 genomes]
rs4773122	0.87[ASN][1000 genomes]
rs7334921	0.88[ASN][1000 genomes]
rs7336335	0.86[ASN][1000 genomes]
rs9521592	0.83[ASN][1000 genomes]
rs9521593	0.87[ASN][1000 genomes]
rs954335	0.88[ASN][1000 genomes]
rs954336	0.88[ASN][1000 genomes]
rs954337	0.88[ASN][1000 genomes]
rs959452	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11069820	ANKRD10	cis	parietal	SCAN
rs11069820	EFNB2	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110711000-110714800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:110713800-110716200	Enhancers	Liver	Liver
3	chr13:110714000-110714800	Enhancers	Adipose Nuclei	Adipose
4	chr13:110714000-110714800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr13:110714000-110715800	Enhancers	HMEC	breast
6	chr13:110714000-110716000	Enhancers	Pancreas	Pancrea
7	chr13:110714000-110716200	Enhancers	Right Ventricle	heart
8	chr13:110714000-110716400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr13:110714200-110715400	Weak transcription	Lung	lung
10	chr13:110714200-110715400	Enhancers	NHEK	skin
11	chr13:110714200-110715800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:110714200-110716200	Enhancers	HSMMtube	muscle
13	chr13:110714400-110715600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:110714400-110715800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:110714400-110716000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:110714400-110716200	Enhancers	Left Ventricle	heart
17	chr13:110714600-110715200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:110714600-110715400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:110714600-110715400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:110714600-110715400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:110714600-110716200	Enhancers	Right Atrium	heart
22	chr13:110714600-110716200	Enhancers	HSMM	muscle

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