Variant report

Variant	rs959452
Chromosome Location	chr13:110722609-110722610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11069820	0.87[ASN][1000 genomes]
rs12875868	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4459422	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4503663	0.88[ASN][1000 genomes]
rs4773118	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4773122	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7334921	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7336335	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9521592	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9521593	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954335	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs954336	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs954337	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs954338	0.83[ASN][1000 genomes]
rs9559719	0.83[ASN][1000 genomes]
rs9588083	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110717800-110723000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110722000-110723000	Enhancers	HSMMtube	muscle
3	chr13:110722000-110723600	Enhancers	HSMM	muscle
4	chr13:110722200-110722800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:110722200-110723200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:110722200-110723600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:110722200-110723600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:110722200-110724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110722200-110724000	Enhancers	HMEC	breast
10	chr13:110722200-110724000	Enhancers	NHEK	skin
11	chr13:110722200-110725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:110722200-110726200	Weak transcription	Brain Germinal Matrix	brain
13	chr13:110722400-110723200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:110722400-110723400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:110722400-110723600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:110722600-110722800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr13:110722600-110723000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:110722600-110723000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:110722600-110723200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr13:110722600-110723600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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