Variant report

Variant	rs11070309
Chromosome Location	chr15:41236582-41236583
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41235426..41238056-chr15:41249028..41251261,4	MCF-7	breast:
2	chr15:41196058..41200363-chr15:41232746..41236796,6	MCF-7	breast:
3	chr15:41233061..41238851-chr15:41242514..41246532,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251161	Chromatin interaction
ENSG00000128965	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11070310	0.82[AFR][1000 genomes]
rs12594536	0.85[AMR][1000 genomes]
rs16952284	1.00[EUR][1000 genomes]
rs16971262	1.00[EUR][1000 genomes]
rs16971415	1.00[EUR][1000 genomes]
rs16971432	1.00[EUR][1000 genomes]
rs2412575	1.00[AMR][1000 genomes]
rs2898999	1.00[EUR][1000 genomes]
rs2899003	1.00[AMR][1000 genomes]
rs34467689	1.00[EUR][1000 genomes]
rs34565230	1.00[EUR][1000 genomes]
rs3866933	1.00[EUR][1000 genomes]
rs4924517	0.82[AFR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs58368241	1.00[AMR][1000 genomes]
rs59140047	1.00[EUR][1000 genomes]
rs59835859	1.00[EUR][1000 genomes]
rs61073993	1.00[EUR][1000 genomes]
rs61633197	1.00[EUR][1000 genomes]
rs7162246	0.85[AMR][1000 genomes]
rs7166572	0.85[AMR][1000 genomes]
rs7174607	1.00[AMR][1000 genomes]
rs73396304	1.00[EUR][1000 genomes]
rs73396306	1.00[EUR][1000 genomes]
rs73401027	1.00[EUR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8024791	1.00[AMR][1000 genomes]
rs936220	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv904106	chr15:41221067-41259523	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41234800-41236600	Enhancers	Lung	lung
2	chr15:41235200-41240600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:41235400-41236600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:41235400-41236800	Weak transcription	Liver	Liver
5	chr15:41235400-41237000	Weak transcription	Pancreas	Pancrea
6	chr15:41235400-41241000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:41235400-41241000	Weak transcription	Left Ventricle	heart
8	chr15:41235400-41241400	Weak transcription	Fetal Intestine Small	intestine
9	chr15:41235400-41241400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:41235400-41244600	Weak transcription	NHLF	lung
11	chr15:41235600-41236600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:41235600-41236800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:41235600-41238000	Weak transcription	GM12878-XiMat	blood
14	chr15:41235600-41240200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:41235800-41237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:41235800-41238000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:41235800-41244800	Weak transcription	Esophagus	oesophagus
18	chr15:41236000-41239800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:41236000-41241400	Weak transcription	Fetal Thymus	thymus
20	chr15:41236200-41236600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:41236200-41241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:41236200-41241200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:41236200-41244600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:41236400-41237200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr15:41236400-41237200	Enhancers	Fetal Muscle Leg	muscle
26	chr15:41236400-41237800	Enhancers	Gastric	stomach
27	chr15:41236400-41241400	Weak transcription	Primary hematopoietic stem cells	blood

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