Variant report

Variant	rs8024791
Chromosome Location	chr15:41217077-41217078
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41216012..41217730-chr15:41244330..41246128,2	MCF-7	breast:
2	chr15:41193987..41204234-chr15:41215915..41223506,12	K562	blood:
3	chr15:41207320..41209153-chr15:41215537..41217549,2	K562	blood:
4	chr15:41216485..41219267-chr15:41244512..41247171,2	K562	blood:
5	chr15:41216351..41218911-chr15:41231824..41234826,3	MCF-7	breast:
6	chr15:41212425..41217996-chr15:41220286..41224266,7	MCF-7	breast:
7	chr15:41197462..41204234-chr15:41215803..41223321,13	K562	blood:
8	chr15:41216845..41219017-chr15:41248901..41250858,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11070309	1.00[AMR][1000 genomes]
rs12594536	0.85[AMR][1000 genomes]
rs2412575	1.00[AMR][1000 genomes]
rs2899003	1.00[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs58368241	1.00[AMR][1000 genomes]
rs7162246	0.85[AMR][1000 genomes]
rs7166572	0.85[AMR][1000 genomes]
rs7174607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41211600-41218000	Weak transcription	Right Atrium	heart
2	chr15:41211800-41218200	Weak transcription	Brain Anterior Caudate	brain
3	chr15:41215200-41217800	Weak transcription	Liver	Liver
4	chr15:41215200-41218000	Weak transcription	Right Ventricle	heart
5	chr15:41215600-41217400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:41215600-41217400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:41216600-41217800	Weak transcription	Lung	lung
8	chr15:41216800-41218400	Bivalent Enhancer	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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