Variant report

Variant	rs11071329
Chromosome Location	chr15:57816243-57816244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57809587..57811723-chr15:57816145..57818249,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11857709	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12913924	0.86[CEU][hapmap]
rs1666568	0.90[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1690337	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2635388	0.90[YRI][hapmap]
rs2641574	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2934449	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4774953	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4774955	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4774957	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57801800-57819000	Weak transcription	Esophagus	oesophagus
3	chr15:57802000-57819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:57803000-57818800	Weak transcription	Fetal Intestine Large	intestine
7	chr15:57803200-57819400	Weak transcription	Ovary	ovary
8	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
9	chr15:57807000-57818400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:57808400-57817200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr15:57808600-57817200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:57808600-57817800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:57808800-57818000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:57808800-57818000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:57808800-57818200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:57809000-57817200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:57809400-57816600	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:57811000-57816400	Weak transcription	Placenta	Placenta
19	chr15:57811000-57827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:57811200-57819400	Weak transcription	Fetal Intestine Small	intestine
21	chr15:57811600-57817200	Weak transcription	HUVEC	blood vessel
22	chr15:57812400-57819400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:57813800-57816400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:57813800-57817200	Strong transcription	Fetal Stomach	stomach
25	chr15:57814200-57816400	Weak transcription	Gastric	stomach
26	chr15:57814400-57817200	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr15:57814600-57819400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:57814600-57819400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:57814600-57819600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:57814600-57819600	Strong transcription	Liver	Liver
31	chr15:57814800-57816400	Weak transcription	Pancreas	Pancrea
32	chr15:57814800-57819000	Weak transcription	Left Ventricle	heart
33	chr15:57814800-57819400	Weak transcription	Brain Anterior Caudate	brain
34	chr15:57814800-57819400	Weak transcription	Fetal Lung	lung
35	chr15:57814800-57819400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:57814800-57819400	Weak transcription	Right Atrium	heart
37	chr15:57814800-57819600	Weak transcription	Brain Angular Gyrus	brain
38	chr15:57815200-57816400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:57815200-57818400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:57815200-57819600	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:57815200-57819600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:57815400-57816800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:57815400-57817000	Strong transcription	HepG2	liver
44	chr15:57815400-57819400	Weak transcription	Fetal Kidney	kidney
45	chr15:57815600-57817000	Strong transcription	Lung	lung
46	chr15:57816000-57816800	Genic enhancers	Fetal Heart	heart
47	chr15:57816000-57819400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:57816200-57816800	Enhancers	Stomach Mucosa	stomach
49	chr15:57816200-57819600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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