Variant report

Variant	rs4774957
Chromosome Location	chr15:57822622-57822623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11071329	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11857709	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12913924	0.83[CEU][hapmap]
rs1666568	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1690337	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2641574	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2934449	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs4774953	0.84[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4774955	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
4	chr15:57811000-57827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:57817000-57826600	Weak transcription	Lung	lung
6	chr15:57817200-57827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
8	chr15:57819800-57823000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:57819800-57824800	Weak transcription	Fetal Kidney	kidney
10	chr15:57819800-57825200	Weak transcription	Left Ventricle	heart
11	chr15:57819800-57825200	Weak transcription	Right Atrium	heart
12	chr15:57819800-57826200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:57819800-57826400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr15:57819800-57829200	Weak transcription	Ovary	ovary
15	chr15:57819800-57833000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:57819800-57840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:57820000-57825800	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:57820000-57826600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:57820000-57826800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:57820200-57822800	Weak transcription	Brain Anterior Caudate	brain
21	chr15:57820200-57823000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:57820200-57823800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:57820200-57824600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57820200-57825000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:57820200-57825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:57820200-57825600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:57820200-57825800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:57820200-57829200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:57820200-57829400	Weak transcription	Brain Angular Gyrus	brain
30	chr15:57820400-57823400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:57820600-57825000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:57820600-57834000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:57820800-57822800	Strong transcription	HepG2	liver
34	chr15:57820800-57825000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:57820800-57826200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:57821000-57823800	Enhancers	Fetal Lung	lung
37	chr15:57821200-57822800	Enhancers	Fetal Intestine Small	intestine
38	chr15:57821200-57822800	Enhancers	HUVEC	blood vessel
39	chr15:57821400-57822800	Enhancers	Colon Smooth Muscle	Colon
40	chr15:57821600-57824400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:57821600-57824800	Weak transcription	Placenta	Placenta
42	chr15:57821600-57825000	Weak transcription	Fetal Stomach	stomach
43	chr15:57821600-57825800	Weak transcription	Adipose Nuclei	Adipose
44	chr15:57821800-57842800	Strong transcription	Liver	Liver
45	chr15:57822000-57823000	Enhancers	Pancreas	Pancrea
46	chr15:57822000-57825600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:57822200-57823000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:57822200-57823400	Enhancers	Brain Germinal Matrix	brain
49	chr15:57822400-57823000	Weak transcription	Fetal Heart	heart
50	chr15:57822400-57823600	Enhancers	Brain Substantia Nigra	brain

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