Variant report

Variant	rs11071386
Chromosome Location	chr15:58815320-58815321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58814659..58816490-chr15:58819397..58821413,2	MCF-7	breast:
2	chr15:58815189..58818138-chr15:58821018..58822626,2	K562	blood:
3	chr15:58814045..58816618-chr15:58898707..58900922,2	MCF-7	breast:
4	chr15:58813787..58816646-chr15:58861427..58864530,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM63B-2	chr15:58814150-58815568	ENSG00000249011
2	lnc-FAM63B-2	chr15:58814150-58815570	ENSG00000259476.1

No data

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11071385	0.94[LWK][hapmap];0.85[YRI][hapmap]
rs1968682	0.89[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs1968687	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11071386	CCNB2	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58804000-58816200	Weak transcription	Liver	Liver
2	chr15:58807600-58815400	Enhancers	Fetal Thymus	thymus
3	chr15:58807800-58815800	Enhancers	Primary B cells from cord blood	blood
4	chr15:58807800-58820200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:58808400-58816200	Weak transcription	HepG2	liver
6	chr15:58809600-58817000	Enhancers	Brain Substantia Nigra	brain
7	chr15:58811200-58815400	Enhancers	GM12878-XiMat	blood
8	chr15:58811600-58815800	Enhancers	Brain Hippocampus Middle	brain
9	chr15:58811800-58815400	Enhancers	Spleen	Spleen
10	chr15:58811800-58815600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:58811800-58815800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:58812000-58815800	Enhancers	Brain Anterior Caudate	brain
13	chr15:58812400-58815800	Enhancers	Fetal Muscle Leg	muscle
14	chr15:58812400-58816000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr15:58812600-58815400	Enhancers	Esophagus	oesophagus
16	chr15:58812600-58815400	Enhancers	Right Atrium	heart
17	chr15:58812600-58815400	Enhancers	Right Ventricle	heart
18	chr15:58812600-58815600	Enhancers	Adipose Nuclei	Adipose
19	chr15:58812600-58815800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:58812600-58816200	Enhancers	Left Ventricle	heart
21	chr15:58812600-58816400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:58812600-58816800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:58812600-58818000	Enhancers	Placenta	Placenta
24	chr15:58812800-58818600	Weak transcription	Gastric	stomach
25	chr15:58813000-58815400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:58813200-58815400	Enhancers	HMEC	breast
27	chr15:58813200-58815600	Enhancers	Aorta	Aorta
28	chr15:58813200-58815600	Enhancers	Pancreas	Pancrea
29	chr15:58813200-58817000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr15:58813400-58815400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:58813400-58815400	Enhancers	HSMM	muscle
32	chr15:58813400-58815400	Enhancers	HSMMtube	muscle
33	chr15:58813400-58815600	Enhancers	A549	lung
34	chr15:58813600-58815400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:58813600-58815400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:58813600-58815800	Enhancers	Brain Angular Gyrus	brain
37	chr15:58813600-58816800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:58813800-58815600	Enhancers	NHEK	skin
39	chr15:58813800-58816200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr15:58813800-58819000	Weak transcription	Fetal Intestine Large	intestine
41	chr15:58813800-58819000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:58814000-58817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr15:58814000-58819000	Weak transcription	Stomach Mucosa	stomach
44	chr15:58814200-58815400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr15:58814200-58815400	Enhancers	Stomach Smooth Muscle	stomach
46	chr15:58814200-58815400	Enhancers	K562	blood
47	chr15:58814200-58816400	Weak transcription	Primary T cells from cord blood	blood
48	chr15:58814200-58817000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:58814400-58815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:58814400-58815600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links