The 2.0 version of rSNPBase

Variant report

Variant rs11071408
Chromosome Location chr15:59445759-59445760
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:59397800-59450000 Weak transcription Small Intestine intestine
2 chr15:59398000-59462000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr15:59421400-59453400 Strong transcription Cortex derived primary cultured neurospheres brain
4 chr15:59422200-59451200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr15:59422600-59447600 Strong transcription Monocytes-CD14+_RO01746 blood
6 chr15:59422600-59451000 Strong transcription Primary monocytes fromperipheralblood blood
7 chr15:59424400-59461400 Strong transcription Hela-S3 cervix
8 chr15:59425200-59455200 Strong transcription Fetal Intestine Small intestine
9 chr15:59425400-59455200 Strong transcription Fetal Intestine Large intestine
10 chr15:59425800-59459600 Strong transcription Liver Liver
11 chr15:59426200-59451000 Weak transcription Psoas Muscle Psoas
12 chr15:59427000-59449200 Weak transcription Brain Angular Gyrus brain
13 chr15:59428200-59451600 Weak transcription Fetal Lung lung
14 chr15:59431800-59467200 Weak transcription Fetal Brain Female brain
15 chr15:59432000-59465600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr15:59432600-59457400 Strong transcription Placenta Placenta
17 chr15:59433400-59456000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr15:59434000-59447800 Strong transcription NHEK skin
19 chr15:59434000-59457600 Strong transcription GM12878-XiMat blood
20 chr15:59434200-59467000 Strong transcription Rectal Mucosa Donor 31 rectum
21 chr15:59434400-59448800 Strong transcription Lung lung
22 chr15:59434400-59455600 Strong transcription Sigmoid Colon Sigmoid Colon
23 chr15:59434600-59455400 Strong transcription Adipose Nuclei Adipose
24 chr15:59434600-59455600 Strong transcription Primary B cells from peripheral blood blood
25 chr15:59434600-59455800 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr15:59436000-59473000 Weak transcription Brain Germinal Matrix brain
27 chr15:59436200-59446200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr15:59436200-59456000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr15:59436400-59451000 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr15:59437800-59484400 Weak transcription Fetal Brain Male brain
31 chr15:59438000-59447200 Strong transcription Colonic Mucosa Colon
32 chr15:59438000-59447800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr15:59438000-59451400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr15:59438000-59458400 Strong transcription Duodenum Mucosa Duodenum
35 chr15:59438400-59447600 Weak transcription Fetal Thymus thymus
36 chr15:59440800-59446400 Strong transcription Skeletal Muscle Female skeletal muscle
37 chr15:59441000-59455400 Strong transcription Muscle Satellite Cultured Cells --
38 chr15:59441000-59457800 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr15:59441000-59458000 Strong transcription A549 lung
40 chr15:59441200-59457800 Strong transcription Osteobl bone
41 chr15:59441600-59446400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr15:59441600-59446800 Strong transcription Skeletal Muscle Male skeletal muscle
43 chr15:59441600-59447600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr15:59441600-59447600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr15:59441600-59448000 Strong transcription HUVEC blood vessel
46 chr15:59441600-59454600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr15:59441600-59455400 Strong transcription HUES6 Cell Line embryonic stem cell
48 chr15:59441800-59446600 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr15:59441800-59447800 Strong transcription iPS-18 Cell Line embryonic stem cell
50 chr15:59441800-59455400 Strong transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015