Variant report

Variant	rs3764194
Chromosome Location	chr15:59398359-59398360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59397489..59399180-chr15:59409328..59412119,2	K562	blood:
2	chr15:59278921..59283219-chr15:59397062..59399778,7	K562	blood:
3	chr15:59277958..59282108-chr15:59396207..59399778,7	K562	blood:
4	chr15:59395795..59398698-chr15:59981439..59982956,2	K562	blood:
5	chr15:59223805..59226728-chr15:59396182..59398979,2	MCF-7	breast:
6	chr15:59223596..59226559-chr15:59396307..59399219,5	K562	blood:
7	chr15:59224236..59226559-chr15:59396307..59398942,5	K562	blood:
8	chr15:59397702..59398564-chr15:59430160..59431033,3	MCF-7	breast:
9	chr15:59061333..59064034-chr15:59397539..59399245,2	K562	blood:
10	chr15:59397711..59399298-chr15:59819776..59821486,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157450	Chromatin interaction
ENSG00000128923	Chromatin interaction
ENSG00000140299	Chromatin interaction
ENSG00000245975	Chromatin interaction
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11071408	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs12438949	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12441365	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12443442	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16941030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16941040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16941042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16941046	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16941051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16941055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16941063	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16941069	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16953412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044436	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2414620	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28365901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376133	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383512	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383514	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383519	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383520	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383523	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383536	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28383542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383545	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383546	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383549	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383551	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383552	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383553	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28383561	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28399204	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28406885	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28491732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28739024	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2899643	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3751538	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3764193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3809531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523870	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56187627	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56294483	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56891889	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57057009	0.83[EUR][1000 genomes]
rs57750394	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57803886	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58014933	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58207484	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58321899	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58827061	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59037515	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59398329	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59921711	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60533405	0.83[EUR][1000 genomes]
rs60628647	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60785075	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61369543	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61690344	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165934	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73418826	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73418888	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73418890	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73418896	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74017339	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74017345	0.83[EUR][1000 genomes]
rs74017356	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74017357	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035850	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8043536	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59396600-59398400	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr15:59396600-59398400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:59396600-59398400	Active TSS	Fetal Kidney	kidney
4	chr15:59396600-59398400	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr15:59396600-59398600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:59396600-59398800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:59396600-59398800	Active TSS	A549	lung
8	chr15:59396600-59398800	Active TSS	K562	blood
9	chr15:59396600-59399400	Active TSS	NHDF-Ad	bronchial
10	chr15:59396800-59398400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:59396800-59398400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr15:59396800-59398400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:59396800-59398400	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:59396800-59398400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:59396800-59398400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:59396800-59398400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:59396800-59398400	Active TSS	Fetal Intestine Large	intestine
18	chr15:59396800-59398400	Active TSS	Fetal Intestine Small	intestine
19	chr15:59396800-59398400	Active TSS	Placenta Amnion	Placenta Amnion
20	chr15:59396800-59398600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr15:59396800-59398600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:59396800-59398600	Active TSS	H1 Cell Line	embryonic stem cell
23	chr15:59396800-59398600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:59396800-59398600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:59396800-59398800	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr15:59396800-59398800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:59396800-59399000	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr15:59396800-59399000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:59396800-59399000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:59397000-59398400	Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr15:59397000-59398400	Active TSS	Fetal Stomach	stomach
32	chr15:59397000-59398400	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:59397000-59398400	Active TSS	HMEC	breast
34	chr15:59397000-59398600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr15:59397000-59398600	Active TSS	HSMM	muscle
36	chr15:59397000-59398800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr15:59397000-59398800	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:59397000-59398800	Active TSS	Muscle Satellite Cultured Cells	--
39	chr15:59397000-59398800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:59397000-59399000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:59397000-59399000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr15:59397200-59398400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:59397200-59398400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:59397600-59398600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:59397800-59398600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr15:59397800-59415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:59397800-59450000	Weak transcription	Small Intestine	intestine
48	chr15:59398000-59398400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:59398000-59398400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr15:59398000-59398400	Active TSS	Fetal Brain Female	brain

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