Variant report

Variant	rs16941063
Chromosome Location	chr15:59434489-59434490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58536925..58538798-chr15:59431746..59434550,2	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12438949	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12443442	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16940976	1.00[CHB][hapmap]
rs16941030	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16941040	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16941042	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16941046	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16941051	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16941055	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16941069	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16953412	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17236439	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2044436	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2414620	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28365901	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28376133	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383490	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383491	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383497	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383502	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383504	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383512	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383513	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383514	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383519	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383520	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383523	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383536	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28383542	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383545	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383546	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383549	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383551	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383552	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383553	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28383561	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28399204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406885	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28491732	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28615244	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28739024	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2899643	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3751538	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3764193	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3764194	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3803449	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3809531	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4523870	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56187627	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56294483	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56891889	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57057009	0.83[EUR][1000 genomes]
rs57750394	0.92[EUR][1000 genomes]
rs57803886	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58014933	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58207484	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58321899	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58827061	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59037515	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59398329	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59921711	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60533405	0.83[EUR][1000 genomes]
rs60628647	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60785075	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61369543	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61690344	0.83[EUR][1000 genomes]
rs7165934	0.85[EUR][1000 genomes]
rs73418826	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73418888	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73418890	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73418896	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74017339	0.83[EUR][1000 genomes]
rs74017345	0.83[EUR][1000 genomes]
rs74017356	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74017357	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8035850	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59397800-59450000	Weak transcription	Small Intestine	intestine
2	chr15:59398000-59462000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:59399600-59437000	Strong transcription	Fetal Thymus	thymus
4	chr15:59401200-59439800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:59409600-59438600	Weak transcription	Primary T cells from cord blood	blood
6	chr15:59421000-59437600	Strong transcription	Dnd41	blood
7	chr15:59421400-59453400	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:59422200-59438800	Strong transcription	Thymus	Thymus
9	chr15:59422200-59451200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:59422600-59439600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:59422600-59440200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:59422600-59440600	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:59422600-59447600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:59422600-59451000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:59422800-59436400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:59422800-59437000	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:59423000-59440000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:59423000-59440200	Strong transcription	Fetal Stomach	stomach
19	chr15:59423200-59437200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:59423400-59437000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr15:59423400-59439200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:59424000-59435600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:59424400-59461400	Strong transcription	Hela-S3	cervix
24	chr15:59425200-59455200	Strong transcription	Fetal Intestine Small	intestine
25	chr15:59425400-59436400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:59425400-59455200	Strong transcription	Fetal Intestine Large	intestine
27	chr15:59425800-59459600	Strong transcription	Liver	Liver
28	chr15:59426200-59451000	Weak transcription	Psoas Muscle	Psoas
29	chr15:59427000-59449200	Weak transcription	Brain Angular Gyrus	brain
30	chr15:59428000-59443200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:59428000-59444800	Weak transcription	Fetal Heart	heart
32	chr15:59428200-59451600	Weak transcription	Fetal Lung	lung
33	chr15:59429600-59439800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:59430000-59442200	Weak transcription	Right Ventricle	heart
35	chr15:59430200-59435200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:59430200-59435400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:59430400-59434600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:59430400-59434600	Weak transcription	NHDF-Ad	bronchial
39	chr15:59430400-59435600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:59430400-59442600	Weak transcription	Ovary	ovary
41	chr15:59430600-59434600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:59430600-59436000	Strong transcription	Primary B cells from cord blood	blood
43	chr15:59430600-59442400	Weak transcription	Brain Anterior Caudate	brain
44	chr15:59430800-59442600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr15:59431200-59434600	Weak transcription	Adipose Nuclei	Adipose
46	chr15:59431200-59439000	Weak transcription	NH-A	brain
47	chr15:59431400-59434800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:59431400-59435400	Weak transcription	Aorta	Aorta
49	chr15:59431400-59435600	Weak transcription	HSMMtube	muscle
50	chr15:59431800-59435600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links