Variant report

Variant	rs11071639
Chromosome Location	chr15:62210274-62210275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10468027	0.83[ASN][1000 genomes]
rs10851703	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10851704	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10851705	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071634	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11071635	0.81[EUR][1000 genomes]
rs11071641	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11071647	0.83[AMR][1000 genomes]
rs11071648	0.82[AMR][1000 genomes]
rs11071650	0.81[ASN][1000 genomes]
rs11629528	0.82[AMR][1000 genomes]
rs11631013	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11632774	0.81[AFR][1000 genomes]
rs11632842	0.83[ASN][1000 genomes]
rs11634516	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11634693	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11635621	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11636504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638344	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12438431	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439330	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12443311	0.84[AMR][1000 genomes]
rs12592464	0.82[ASN][1000 genomes]
rs12593860	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12595300	0.91[ASN][1000 genomes]
rs12708468	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12708469	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12898209	0.84[ASN][1000 genomes]
rs12901171	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12901575	0.83[ASN][1000 genomes]
rs12902092	0.82[EUR][1000 genomes]
rs12902409	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12909947	0.80[ASN][1000 genomes]
rs12910541	0.80[ASN][1000 genomes]
rs1346036	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1364810	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1370177	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1436965	0.82[ASN][1000 genomes]
rs1561197	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17238252	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17271235	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17303968	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17304010	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1991205	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2042610	0.85[AMR][1000 genomes]
rs2059470	0.85[ASN][1000 genomes]
rs2059471	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2098850	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2113932	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2113933	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2162064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241491	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2414756	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2414758	0.85[ASN][1000 genomes]
rs28413840	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28472272	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28587331	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28591222	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28725250	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2899678	0.91[ASN][1000 genomes]
rs3210522	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3743294	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3809517	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3886246	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4372632	0.83[ASN][1000 genomes]
rs4541010	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4581655	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4620905	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4638519	0.83[ASN][1000 genomes]
rs4774425	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775442	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775443	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4775444	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4775445	0.89[ASN][1000 genomes]
rs4775447	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775451	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56215106	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6494299	0.82[EUR][1000 genomes]
rs6494300	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7161883	0.82[ASN][1000 genomes]
rs7163441	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7164933	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7168164	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7172838	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7402374	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8025282	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8028217	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8033816	0.81[ASN][1000 genomes]
rs8035049	0.83[AMR][1000 genomes]
rs8037603	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8038328	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9788670	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9920945	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904285	chr15:62146598-62246864	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv904286	chr15:62146598-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv904287	chr15:62146598-62338797	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv904288	chr15:62146598-62356386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569641	chr15:62155282-62287456	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv904289	chr15:62156690-62287456	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv516639	chr15:62175134-62340126	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv904290	chr15:62175134-62356386	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv569642	chr15:62178695-62243197	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv904291	chr15:62178695-62287456	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv904292	chr15:62178695-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv904293	chr15:62178695-62338797	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv904294	chr15:62178695-62356386	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv457176	chr15:62178695-62519658	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv569643	chr15:62178695-62519658	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
19	nsv904295	chr15:62198564-62259637	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv904296	chr15:62198564-62313373	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv471247	chr15:62202481-62519658	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv569644	chr15:62202482-62247067	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv904297	chr15:62202482-62313373	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv569645	chr15:62202482-62319307	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv569646	chr15:62202482-62519658	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
26	esv1816724	chr15:62205104-62285146	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
27	nsv827348	chr15:62210172-62210628	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
2	chr15:62143800-62235600	Weak transcription	Fetal Brain Male	brain
3	chr15:62146800-62230000	Weak transcription	Pancreas	Pancrea
4	chr15:62150000-62276200	Weak transcription	Psoas Muscle	Psoas
5	chr15:62184600-62236800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:62185000-62221000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:62185600-62262200	Weak transcription	Gastric	stomach
8	chr15:62185600-62333600	Weak transcription	Right Ventricle	heart
9	chr15:62185800-62300000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:62187200-62246000	Weak transcription	A549	lung
11	chr15:62188600-62309400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:62194600-62235400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:62194600-62266800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:62194800-62225600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:62195000-62215000	Strong transcription	Adipose Nuclei	Adipose
16	chr15:62195000-62219800	Strong transcription	Primary B cells from cord blood	blood
17	chr15:62195200-62217800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:62195400-62215200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:62195400-62234200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr15:62195400-62235800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:62195600-62285400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:62196000-62214800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:62196200-62214600	Strong transcription	Primary hematopoietic stem cells	blood
24	chr15:62196400-62225200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:62196800-62215000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:62197000-62225400	Weak transcription	Esophagus	oesophagus
27	chr15:62197000-62236200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:62197800-62215400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:62198000-62215600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:62198400-62211200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:62198800-62223600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:62202800-62215800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr15:62203400-62215600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr15:62204000-62210400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:62204000-62215400	Strong transcription	Liver	Liver
36	chr15:62205000-62216600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:62205000-62236600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:62205200-62215800	Strong transcription	Dnd41	blood
39	chr15:62205400-62211000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:62205400-62214800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:62205400-62215600	Strong transcription	Placenta	Placenta
42	chr15:62205400-62215800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr15:62205400-62219800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:62206000-62215000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:62206600-62242600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:62207000-62211800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:62207200-62211400	Strong transcription	Hela-S3	cervix
48	chr15:62207200-62214400	Strong transcription	Brain Hippocampus Middle	brain
49	chr15:62207200-62215000	Strong transcription	GM12878-XiMat	blood
50	chr15:62207200-62215200	Strong transcription	HSMM	muscle

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