Variant report

Variant	rs11072660
Chromosome Location	chr15:77935992-77935993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:77935940-77936090	RPTEC	kidney:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
2	CTCF	chr15:77935920-77936070	HRPEpiC	eye:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
3	CTCF	chr15:77935940-77936090	HepG2	liver:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
4	CTCF	chr15:77935940-77936090	HEK293	kidney:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
5	CTCF	chr15:77935920-77936070	NB4	blood:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
6	CTCF	chr15:77935989-77936125	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
7	CTCF	chr15:77935940-77936090	WERI-Rb-1	eye:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
8	CTCF	chr15:77935960-77936110	Hela-S3	cervix:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
9	CTCF	chr15:77935965-77936147	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
10	CTCF	chr15:77935960-77936110	GM12871	blood:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
11	CTCF	chr15:77935920-77936070	HL-60	blood:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
12	RAD21	chr15:77935884-77936227	H1-hESC	embryonic stem cell:	n/a	chr15:77936049-77936062 chr15:77936051-77936063 chr15:77936046-77936065 chr15:77936051-77936061 chr15:77936117-77936136
13	CTCF	chr15:77935880-77936030	SK-N-SH_RA	brain:	n/a	chr15:77936008-77936016
14	CTCF	chr15:77935820-77936090	BE2_C	brain:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
15	CTCF	chr15:77935860-77936010	SAEC	small airway:	n/a	n/a
16	CTCF	chr15:77935980-77936130	Hela-S3	cervix:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
17	CTCF	chr15:77935916-77936191	A549	lung:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
18	CTCF	chr15:77935960-77936110	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
19	CTCF	chr15:77935785-77936343	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
20	CTCF	chr15:77935946-77936162	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
21	CTCF	chr15:77935987-77936148	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
22	CTCFL	chr15:77935965-77936108	K562	blood:	n/a	n/a
23	CTCF	chr15:77935938-77936318	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
24	CTCF	chr15:77935981-77936126	MCF-7	breast:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
25	CTCF	chr15:77935960-77936110	GM12875	blood:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016
26	RAD21	chr15:77935938-77936138	H1-hESC	embryonic stem cell:	n/a	chr15:77936049-77936062 chr15:77936051-77936063 chr15:77936046-77936065 chr15:77936051-77936061 chr15:77936117-77936136
27	CTCF	chr15:77935933-77936160	HepG2	liver:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
28	CTCF	chr15:77935961-77936140	H1-hESC	embryonic stem cell:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936119-77936137 chr15:77936008-77936016 chr15:77936121-77936134
29	CTCF	chr15:77935940-77936090	AG04449	skin:	n/a	chr15:77936048-77936061 chr15:77936045-77936063 chr15:77936008-77936016

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77917075..77919713-chr15:77934421..77936689,2	MCF-7	breast:
2	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:

Variant related genes	Relation type
ENSG00000259666	TF binding region
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs8028788	0.87[LWK][hapmap];0.80[MKK][hapmap];0.85[YRI][hapmap]
rs9806280	0.89[YRI][hapmap]
rs9972481	0.87[LWK][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77927200-77940600	Weak transcription	Right Atrium	heart
2	chr15:77930600-77936200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:77933200-77937000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:77933800-77936600	Enhancers	Fetal Muscle Leg	muscle
5	chr15:77934000-77936800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr15:77934200-77939200	Weak transcription	Fetal Intestine Small	intestine
7	chr15:77934600-77936000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:77934600-77936200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr15:77934800-77942600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:77935000-77936000	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:77935000-77937800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:77935200-77936000	Flanking Bivalent TSS/Enh	HepG2	liver
13	chr15:77935200-77936200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:77935800-77936800	Weak transcription	Fetal Brain Female	brain
15	chr15:77935800-77940800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:77935800-77942600	Weak transcription	H1 Cell Line	embryonic stem cell

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